Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G013700.2 | Wheat | nucleus | 93.22 | 93.7 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 90.35 | 89.8 |
| TraesCS6A01G013800.1 | Wheat | plastid | 13.14 | 82.58 |
| HORVU6Hr1G002580.6 | Barley | plastid | 86.34 | 79.26 |
| Os07t0498800-01 | Rice | cytosol | 36.34 | 52.84 |
| KXG25466 | Sorghum | nucleus | 46.71 | 48.05 |
| Zm00001d052721_P001 | Maize | plasma membrane | 41.68 | 44.86 |
| CDX95199 | Canola | nucleus | 11.91 | 33.53 |
| CDY42355 | Canola | nucleus | 27.0 | 32.15 |
| Bra027974.1-P | Field mustard | nucleus | 26.8 | 31.75 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 33.37 | 31.61 |
| AT5G42220.1 | Thale cress | nucleus | 26.8 | 29.69 |
| Solyc04g082160.2.1 | Tomato | nucleus | 25.36 | 28.82 |
| KRH17506 | Soybean | nucleus | 26.9 | 27.99 |
| KRH06004 | Soybean | nucleus | 27.0 | 27.98 |
| PGSC0003DMT400025616 | Potato | plastid | 19.4 | 27.96 |
| CDX95198 | Canola | nucleus | 12.73 | 26.78 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 25.77 | 26.56 |
| TraesCS3B01G094400.5 | Wheat | cytosol | 18.17 | 25.54 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G020900.1 | EnsemblPlantsGene:TraesCS6B01G020900 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR15204 |
| PANTHER:PTHR15204:SF5 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | TIGR:cd01809 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr6B:+:12666287..12673728
Molecular Weight (calculated)
99987.5 Da
IEP (calculated)
4.593
GRAVY (calculated)
-0.343
Length
974 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDGAGGAG SSTARDGADG PEPATIEINI KTLESQVHKL RVDKNETVLN LKEKIVDVAG IPVEQQRLIF RGRVLKDDHL LSEYHLEDGY TLHLVARRTA
101: EGQHSSETPE ANPNANASGA GNGAMLGDYM SRETIDVMVS EGVINDIPAT VRDILGNFLG MPGGVANATF SVPLNHPPPD GANNGRTQPG QAPPGFSILN
201: HQIHVSQLPP SGAIPRNMVV PDSMTTLLEY INRMDQVLQN NGVPPSADSN AQEPPTSATD DAYLNQSFPS PEVLASVVER AQQLLGGSAS SALSHLAQHI
301: QRDAATADTS VRSQIQNESA QLGVAMQHLG AMLFELGRTM MTLRMGPSPI NAFVNAGPAV YITPTGPSPI MVQPSFQSAP HFGVSSIPPV FGVSGPFGIV
401: DPSRANGVNI HAGASATSGP SGGSTTASAT TANGESQNAE RPQGGNPSAT RGLPPRTVVT GLAAIPAFPG RSSVGVILPV QMRSQVAAPN QSTGPQGSET
501: AVGNGSQPNS AYVVPQASSG SAVSAMIAQI SAQVANALAA NPQALASLTS AVLNPAAQGP HPPTTNNGAG TVSSVTSGNT QSQNELPGSH HGQTSVNMQS
601: DATGAGTVPS NTSGPSLTPQ DISTVSVSDV DSSQQRSGES AAASLGGQMT GTLTGDVPLG MPAENSELKS KPSDGETGES TKPAASGGSG PLGLGGGLQP
701: KRRSRATKLS GTSSDSGEAV NTSSVPRSQE AVLRGQQALQ ALVSRGANAS SGSVTASQAP SSTPRSAAGM PLRRPGGEGQ VDLGSMLSSV LNNPMFSNLM
801: SNVAAQTGMD SPADVRNIME DLTQNRAVMD TLSSMVQNVD VPQRGGQGGF DLSSMMQQMM PVVSQVLGGA SPRRAGTDVQ PRQNDREVSG AAGGRSSQMD
901: LQEACQRIEQ RDAPEDIFGA VLETAAQAYG NDESIEVMLE ELASDPELAD EYMKLLLEQV GERVESESEA KTQS
101: EGQHSSETPE ANPNANASGA GNGAMLGDYM SRETIDVMVS EGVINDIPAT VRDILGNFLG MPGGVANATF SVPLNHPPPD GANNGRTQPG QAPPGFSILN
201: HQIHVSQLPP SGAIPRNMVV PDSMTTLLEY INRMDQVLQN NGVPPSADSN AQEPPTSATD DAYLNQSFPS PEVLASVVER AQQLLGGSAS SALSHLAQHI
301: QRDAATADTS VRSQIQNESA QLGVAMQHLG AMLFELGRTM MTLRMGPSPI NAFVNAGPAV YITPTGPSPI MVQPSFQSAP HFGVSSIPPV FGVSGPFGIV
401: DPSRANGVNI HAGASATSGP SGGSTTASAT TANGESQNAE RPQGGNPSAT RGLPPRTVVT GLAAIPAFPG RSSVGVILPV QMRSQVAAPN QSTGPQGSET
501: AVGNGSQPNS AYVVPQASSG SAVSAMIAQI SAQVANALAA NPQALASLTS AVLNPAAQGP HPPTTNNGAG TVSSVTSGNT QSQNELPGSH HGQTSVNMQS
601: DATGAGTVPS NTSGPSLTPQ DISTVSVSDV DSSQQRSGES AAASLGGQMT GTLTGDVPLG MPAENSELKS KPSDGETGES TKPAASGGSG PLGLGGGLQP
701: KRRSRATKLS GTSSDSGEAV NTSSVPRSQE AVLRGQQALQ ALVSRGANAS SGSVTASQAP SSTPRSAAGM PLRRPGGEGQ VDLGSMLSSV LNNPMFSNLM
801: SNVAAQTGMD SPADVRNIME DLTQNRAVMD TLSSMVQNVD VPQRGGQGGF DLSSMMQQMM PVVSQVLGGA SPRRAGTDVQ PRQNDREVSG AAGGRSSQMD
901: LQEACQRIEQ RDAPEDIFGA VLETAAQAYG NDESIEVMLE ELASDPELAD EYMKLLLEQV GERVESESEA KTQS
001: MEDQPINQCS SSTNASEKTP ESTLELNIKT LDSRTYTFQV NKNETVLLFK EKIASETGVP VGQQRLIFRG RVLKDDHPLS EYHLENGHTL HLIVRQPAES
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
101: APSSGTPSQG ATANDGNNTN GGPSRNGRHV SHSVVLGSFN VGDQTEGIVP DLSRVIGAVL NSFGVSGQLP TNHSTNGTQS SMPSNQSSNA PPGNTSDGEP
201: GIGGQSQATG HSQPRQAFPG VSFQTSMPRV VQIPVTAATT IPIPSFLTPI PDSLDTLMEF INRMEQALSQ NGYQPDTSSA GSGGRPREEL PRNRRGAATP
301: EALSVVLRNA QHLLSGLGVS SLSHIAGRLE QDGSSSDPTL RSQIQTEAVQ VGLAMQHLGA LLLELGRTIL TLRMAPSPEL SYVNAGPAVY ISPSGPNPIM
401: VQPFPHQISP LFTGATVSSN PLTGPVGLGT AQRHINIHIH AGTSGSPMLS SVGNQRSNGE GGQGDRDSNT SSVPAAVPSH STGENVSAGV QPGLGDDVSV
501: AQINARIRDM VNIMQGRDQI PSGIESLERD MSTGHGVATA MPEQPTNIAT TCAPESSSGS LHDLPSERSN SVCQNEKDLG GDLEHPARAK DTSCTTGQSS
601: APSGDATGDA KETNKATPEV ATATPLGLGL GGLDRKKRSK QPKVSGKTED SGTSATLEGV QQSSGTSGQQ LLQSLFSGSS RSDETGLRRG QGSDDRVDVS
701: SAMSQVLESP VLDGLLAGVS RQAGVDSPNM LRNMLQQFTQ NPQIMNTVQQ IAQQVDGQEI ENMMSGGAQG EGGGFDFSRM VQQMMPLVSR AFSQGGPLPH
801: PATIQPDDRQ PSQVNVQSMA QMIEHSDPPE DVFRAMVENA AISQDELVNE LCCDEALSQE YAELLRRDIE GRLKDDQGL
Arabidopsis Description
AT5g42220/K5J14_2 [Source:UniProtKB/TrEMBL;Acc:Q8L745]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.