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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, vacuole
Any Predictor:nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU84317
OQU85411

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G48690.1 OQU84317 AT4G10930.1 21798944
AT3G48690.1 OQU85411 AT5G10110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d031801_P001 Maize endoplasmic reticulum 83.94 83.94
Os08t0475100-01 Rice extracellular 72.11 76.88
TraesCS5B01G412100.1 Wheat endoplasmic reticulum 68.45 72.54
TraesCS5D01G417100.1 Wheat endoplasmic reticulum 68.45 72.11
HORVU5Hr1G098770.1 Barley plasma membrane 70.14 68.78
KXG35780 Sorghum extracellular, vacuole 59.15 59.32
TraesCS5A01G407200.1 Wheat plastid 69.3 57.75
EES15127 Sorghum extracellular 53.8 50.93
KXG25394 Sorghum cytosol 46.2 49.7
OQU80637 Sorghum plasma membrane 54.08 48.48
GSMUA_Achr6P04360_001 Banana cytosol 40.0 48.46
GSMUA_Achr6P04230_001 Banana cytosol 31.83 48.29
GSMUA_Achr3P06860_001 Banana cytosol 32.68 47.35
KXG19591 Sorghum cytosol 42.25 46.3
EER99019 Sorghum cytosol 41.69 45.26
GSMUA_Achr7P12950_001 Banana cytosol 41.13 45.2
KXG35785 Sorghum extracellular, golgi, vacuole 47.32 44.56
KXG35781 Sorghum cytosol 38.59 43.77
EER88163 Sorghum cytosol 38.03 42.59
OQU80639 Sorghum cytosol 39.44 41.92
OQU89622 Sorghum cytosol 37.18 41.51
EER88069 Sorghum cytosol 38.87 41.44
KXG35782 Sorghum cytosol 39.15 41.25
KXG25323 Sorghum cytosol 38.31 41.21
KRH50255 Soybean cytosol 35.21 41.12
KXG35761 Sorghum cytosol 37.46 40.8
KXG35760 Sorghum cytosol 37.18 40.74
KXG35783 Sorghum extracellular, vacuole 41.41 40.5
PGSC0003DMT400066384 Potato cytosol 23.38 40.49
VIT_03s0063g00700.t01 Wine grape cytosol 36.62 40.25
VIT_03s0063g00720.t01 Wine grape cytosol 36.62 40.25
VIT_03s0063g00820.t01 Wine grape cytosol 34.08 40.2
KRH71164 Soybean cytosol 34.37 40.13
EER89413 Sorghum cytosol 38.31 40.0
EES16153 Sorghum cytosol 37.75 40.0
VIT_03s0063g00750.t01 Wine grape cytosol 36.34 39.94
CDX77920 Canola cytosol 34.93 39.74
VIT_03s0063g00730.t01 Wine grape cytosol 35.77 39.69
VIT_03s0063g00780.t01 Wine grape cytosol, peroxisome, plastid 33.24 39.33
CDY37916 Canola cytosol 35.77 39.32
VIT_03s0063g00810.t01 Wine grape cytosol 34.65 39.3
Bra019558.1-P Field mustard cytosol 35.49 39.01
EER96865 Sorghum cytosol 35.77 38.84
VIT_03s0063g00740.t01 Wine grape cytosol 35.21 38.82
VIT_03s0063g00800.t01 Wine grape cytosol 32.68 38.67
CDX83045 Canola cytosol 35.21 38.58
PGSC0003DMT400066385 Potato cytosol 33.24 38.44
Solyc01g108530.2.1 Tomato cytosol 33.24 38.44
Solyc01g108570.2.1 Tomato cytosol, extracellular 33.52 38.39
Bra029913.1-P Field mustard cytosol 35.21 38.34
KXG26418 Sorghum cytosol 35.77 38.25
KXG21709 Sorghum cytosol, mitochondrion, plastid 30.14 38.21
OQU85176 Sorghum plastid 36.62 38.12
CDX68486 Canola cytosol 34.65 38.08
Solyc01g108560.2.1 Tomato cytosol, plastid 32.11 37.87
Bra025117.1-P Field mustard cytosol 32.39 37.83
AT2G03550.1 Thale cress cytosol 33.24 37.82
CDY67024 Canola cytosol 34.37 37.77
KRH71161 Soybean cytosol 29.01 37.73
PGSC0003DMT400066392 Potato cytosol 33.24 37.7
AT3G48700.1 Thale cress cytosol 34.93 37.69
PGSC0003DMT400066389 Potato cytosol 30.99 37.67
KRH50256 Soybean cytosol 33.52 37.42
VIT_03s0063g00830.t01 Wine grape cytosol 31.83 37.42
Solyc01g108540.2.1 Tomato cytosol 32.39 37.22
VIT_03s0063g00790.t01 Wine grape cytosol 31.55 37.21
PGSC0003DMT400066386 Potato cytosol 32.68 37.18
AT3G48690.1 Thale cress cytosol 33.8 37.04
PGSC0003DMT400091080 Potato cytosol 32.39 36.86
Bra029912.1-P Field mustard cytosol 33.24 36.53
KRH71163 Soybean cytosol 30.99 36.42
Solyc01g108580.2.1 Tomato cytosol 31.83 36.22
Solyc10g050880.1.1 Tomato cytosol 31.83 36.22
OQU89623 Sorghum mitochondrion 38.87 36.13
CDY28098 Canola cytosol 32.68 36.02
OQU81663 Sorghum cytosol 36.06 35.96
AT1G19190.1 Thale cress cytosol 31.83 35.53
AT1G49660.1 Thale cress cytosol 31.55 35.11
CDY41024 Canola peroxisome 31.83 34.98
CDY28094 Canola cytosol 31.55 34.89
CDY51033 Canola cytosol 31.27 34.69
KRH71162 Soybean cytosol, nucleus 32.39 34.53
PGSC0003DMT400088862 Potato cytosol 33.24 34.3
Solyc01g108520.1.1 Tomato endoplasmic reticulum, extracellular 30.42 34.29
Bra025714.1-P Field mustard cytosol 22.82 34.03
CDX96674 Canola cytosol 30.99 33.85
Bra018807.1-P Field mustard cytosol 30.99 33.74
OQU76051 Sorghum golgi, plasma membrane, vacuole 45.92 33.61
PGSC0003DMT400066383 Potato cytosol 28.73 33.55
Bra018809.1-P Field mustard cytosol 29.86 33.54
CDY51035 Canola cytosol 30.7 33.44
Bra016519.1-P Field mustard cytosol 30.42 33.03
AT1G49640.1 Thale cress cytosol 29.3 33.02
Bra040667.1-P Field mustard cytosol 29.58 32.92
CDY20870 Canola cytosol 29.3 32.6
CDY02986 Canola cytosol 32.39 32.58
CDY29339 Canola cytosol 29.01 32.29
CDY16521 Canola mitochondrion 34.08 31.84
Bra014213.1-P Field mustard mitochondrion 33.8 31.58
VIT_03s0063g00770.t01 Wine grape plastid 36.9 31.49
CDY32845 Canola mitochondrion 32.39 31.42
KRH50257 Soybean cytosol 28.73 31.38
AT1G49650.1 Thale cress mitochondrion 32.96 31.28
Bra018808.1-P Field mustard plastid 32.39 30.18
KRH71160 Soybean nucleus 32.96 29.77
CDY28095 Canola plastid 31.83 29.74
CDY51034 Canola plastid 31.83 29.74
EER97903 Sorghum cytosol 35.77 28.04
GSMUA_Achr5P24460_001 Banana cytosol, endoplasmic reticulum, peroxisome 36.62 21.1
Protein Annotations
Gene3D:3.40.50.1820MapMan:35.1EntrezGene:8083547InterPro:AB_hydrolaseInterPro:AB_hydrolase_3UniProt:C5YMC0
EnsemblPlants:EES14010ProteinID:EES14010ProteinID:EES14010.1GO:GO:0003674GO:GO:0003824GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0016787InterPro:IPR029058InterPro:Lipase_GDXG_put_SER_ASPFAM:PF07859
ScanProsite:PS01174PANTHER:PTHR23024PANTHER:PTHR23024:SF134EnsemblPlantsGene:SORBI_3007G157500SUPFAM:SSF53474unigene:Sbi.157
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A87AD2RefSeq:XP_002444515.1SEG:seg:
Description
hypothetical protein
Coordinates
chr7:+:59178554..59180235
Molecular Weight (calculated)
37929.4 Da
IEP (calculated)
9.788
GRAVY (calculated)
0.026
Length
355 amino acids
Sequence
(BLAST)
001: MAASPVLLVA AALCLCALLF GAGEAATKGG AAASSAFRSR ATDPNMEVKF DFSPFLIQYK SGRVQRFMGT TFVPASMDSR TGVASRDVVV DHGTGLAVRL
101: YRPSRRAVAA GAGGGRRLPV LVYFHGGAFV VESAFDPVYH NYLNALTAKA GVIAVSVNYR LAPEHPLPAA YDDAWTALSW VLDNARRGGD PWLAKHGDAS
201: RLFLAGDSAG GNIAHNLAMR AGQQQGGAAA RIKGVALLDP YFLGRYVSGG SQRSWDFICA GRYGMDHPYV DPMAALPAEV WRRLPSARVL MTVSDQDRLG
301: PFQREYVDAL RASGWRGQAR LYVTPGEGHC YFLNNLASPK AAMHMATLAA FINGS
Best Arabidopsis Sequence Match ( AT1G19190.1 )
(BLAST)
001: MDSEIAFDYS PRFRIFKNGG IERLVPETFV PPSLNPENGV VSKDAVYSPE KNLSLRIYLP QNSVYETGEK KIPLLVYFHG GGFIMETAFS PIYHTFLTSA
101: VSATDCIAVS VEYRRAPEHP IPTLYEDSWD AIQWIFTHIT RSGPEDWLNK HADFSKVFLA GDSAGANIAH HMAIRVDKEK LPPENFKISG MILFHPYFLS
201: KALIEEMEVE AMRYYERLWR IASPDSGNGV EDPWINVVGS DLTGLGCRRV LVMVAGNDVL ARGGWSYVAE LEKSGWIGKV KVMETKEEGH VFHLRDPDSE
301: NARRVLRNFA EFLKEETF
Arabidopsis Description
CXE1Probable carboxylesterase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMA7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.