Factsheet for PGSC0003DMT400041410

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0295100-00	Rice	cytosol	18.78	22.98
AT5G25270.1	Thale cress	cytosol	29.63	17.45
CDX80493	Canola	cytosol	28.84	17.41
Bra009827.1-P	Field mustard	cytosol	28.31	16.67
CDX88166	Canola	cytosol	28.04	16.51
KRH03572	Soybean	nucleus	31.22	16.5
VIT_04s0008g06230.t01	Wine grape	cytosol	30.69	15.85
VIT_11s0118g00660.t01	Wine grape	endoplasmic reticulum, plasma membrane	26.98	14.53
Zm00001d001962_P014	Maize	cytosol	23.02	12.85
GSMUA_Achr3P28400_001	Banana	endoplasmic reticulum, plasma membrane	23.28	12.64
KXG27341	Sorghum	cytosol	22.75	12.57
TraesCS3A01G079200.2	Wheat	cytosol	23.02	12.45
TraesCS3D01G079600.2	Wheat	cytosol	23.02	12.39
TraesCS3B01G094400.5	Wheat	cytosol	21.69	11.83
HORVU3Hr1G014250.5	Barley	cytosol, plastid	22.49	11.2
PGSC0003DMT400041411	Potato	nucleus, plastid	10.85	7.37
PGSC0003DMT400025616	Potato	plastid	6.88	3.85
Os08t0295000-01	Rice	cytosol	0.79	2.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400041410	EnsemblPlantsGene:PGSC0003DMG401016046	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR15204	PANTHER:PTHR15204:SF3	PFAM:PF00240
PFscan:PS50053	PGSC:PGSC0003DMG401016046	SEG:seg	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000295B1E7
UniProt:M1BBC4	MapMan:35.1	:	:	:	:

Description

Scythe/bat3 [Source:PGSC_GENE;Acc:PGSC0003DMG401016046]

Coordinates

chr6:-:20828526..20830678

Molecular Weight (calculated)

40958.0 Da

IEP (calculated)

8.589

GRAVY (calculated)

-0.138

Length

378 amino acids

Sequence
(BLAST)

001: MVSNGAEDVQ ICGSGEAECP ETTVPVPALK EQIATVTGVL TEQQRLICRG KVLKDDQLLS AYHVEDGHTL HLVVRQPSSD STPDPQATAS ASSAGYSQGN
101: RVSPGVVVGT YSSSDHGDGI FPDLNRIVTA VLGSFGIASA GGGNAGIDLH AKLSPSVLAF TLISFTFSEF RTTNFTWGKK GFTFTLDLNR MTSLSSVLGQ
201: EHGLNGLSVA GMRKVTLSLK VMRWLVQVLI EASKEQRMTV GRWKTKHHFA EFFCTLKYNE HGRYARFIAV QGGSRSVIIT PETTLNDAWI ETAQKVTKFI
301: GVSERGEKTA VIGQHQIKSS FVEANRSNKW ETEAIKGLTP QITPCRITLP GSSIVSEDDV LGRCIVGKLL DMSKKRQL

Best Arabidopsis Sequence Match ( AT5G25270.1 )
(BLAST)

001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE

Arabidopsis Description

Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.