Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G27160.1 | Thale cress | extracellular, vacuole | 79.52 | 80.49 |
| AT4G27150.1 | Thale cress | extracellular | 81.93 | 80.0 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 72.89 | 73.78 |
| CDY29278 | Canola | vacuole | 64.46 | 62.21 |
| CDY29280 | Canola | vacuole | 64.46 | 61.85 |
| CDX89273 | Canola | cytosol | 63.86 | 61.63 |
| CDY46662 | Canola | vacuole | 63.86 | 61.27 |
| Bra019067.1-P | Field mustard | vacuole | 63.86 | 61.27 |
| CDY29281 | Canola | vacuole | 63.86 | 61.27 |
| CDX89275 | Canola | vacuole | 63.25 | 61.05 |
| CDX89271 | Canola | vacuole | 63.25 | 61.05 |
| CDY32264 | Canola | cytosol | 65.66 | 60.89 |
| Bra038483.1-P | Field mustard | vacuole | 65.66 | 60.89 |
| CDY29279 | Canola | vacuole | 65.66 | 60.56 |
| CDX70800 | Canola | vacuole | 63.25 | 59.66 |
| CDY61462 | Canola | vacuole | 64.46 | 59.44 |
| Bra026372.1-P | Field mustard | extracellular | 43.37 | 59.02 |
| Bra026375.1-P | Field mustard | vacuole | 63.25 | 58.33 |
| CDX89270 | Canola | vacuole | 43.98 | 57.94 |
| CDY51244 | Canola | cytosol | 64.46 | 57.53 |
| Bra026373.1-P | Field mustard | vacuole | 62.65 | 57.14 |
| Bra006444.1-P | Field mustard | vacuole | 62.05 | 55.98 |
| Bra010409.1-P | Field mustard | vacuole | 57.23 | 55.56 |
| Bra026374.1-P | Field mustard | vacuole | 63.86 | 54.64 |
| AT5G54740.1 | Thale cress | extracellular, vacuole | 51.81 | 52.12 |
| CDX97380 | Canola | cytosol | 25.9 | 35.83 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 24.7 | 34.17 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | EntrezGene:828825 | ProteinID:AAA32746.1 | ProteinID:AEE85309.1 | EMBL:AF446894 |
| ArrayExpress:AT4G27170 | EnsemblPlantsGene:AT4G27170 | RefSeq:AT4G27170 | TAIR:AT4G27170 | RefSeq:AT4G27170-TAIR-G | EnsemblPlants:AT4G27170.1 |
| TAIR:AT4G27170.1 | EMBL:AY052682 | Unigene:At.28758 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | ProteinID:CAA80869.1 |
| ProteinID:CAB38847.1 | ProteinID:CAB79572.1 | GO:GO:0003674 | GO:GO:0045735 | RefSeq:NP_194447.1 | InterPro:Napin |
| UniProt:P15460 | PFAM:PF00234 | PRINTS:PR00496 | PANTHER:PTHR35496 | Symbol:SESA4 | SMART:SM00499 |
| SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0000000F0B | EMBL:Z17597 | EMBL:Z17601 |
| SEG:seg | : | : | : | : | : |
Description
AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
Coordinates
chr4:+:13613596..13614283
Molecular Weight (calculated)
19170.1 Da
IEP (calculated)
7.572
GRAVY (calculated)
-0.516
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.