CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX84933
CDX95198
CDX95199
CDY03907
CDY15722
CDY27605
CDY42355
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27140.1	CDX84933	AT1G27300.1	21798944
AT4G27140.1	CDY03907	AT1G27300.1	21798944
AT4G27140.1	CDY15722	AT1G27300.1	21798944
AT4G27140.1	CDY27605	AT1G27300.1	21798944
AT4G27140.1	CDX95198	AT5G42220.1	21798944
AT4G27140.1	CDX95199	AT5G42220.1	21798944
AT4G27140.1	CDY42355	AT5G42220.1	21798944
AT4G27160.1	CDX74635	AT5G35750.1	18642946
AT4G27160.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14281	Canola	cytosol, nucleus, plastid	91.67	91.67
Bra010409.1-P	Field mustard	vacuole	70.83	49.71
CDY32264	Canola	cytosol	45.83	30.73
CDX89275	Canola	vacuole	42.5	29.65
AT4G27140.1	Thale cress	extracellular, vacuole	40.0	29.27
CDX89271	Canola	vacuole	41.67	29.07
CDX89273	Canola	cytosol	41.67	29.07
CDY29278	Canola	vacuole	41.67	29.07
CDY29280	Canola	vacuole	41.67	28.9
CDX70800	Canola	vacuole	41.67	28.41
CDY61462	Canola	vacuole	42.5	28.33
CDY29279	Canola	vacuole	42.5	28.33
CDY29281	Canola	vacuole	40.83	28.32
CDY51244	Canola	cytosol	42.5	27.42
AT4G27150.1	Thale cress	extracellular	37.5	26.47
CDY46662	Canola	vacuole	37.5	26.01
AT4G27170.1	Thale cress	extracellular, vacuole	35.83	25.9
AT4G27160.1	Thale cress	extracellular, vacuole	34.17	25.0
CDX92819	Canola	endoplasmic reticulum, extracellular	30.83	23.42
CDY46659	Canola	cytosol	30.83	23.42
CDX89270	Canola	vacuole	19.17	18.25

Protein Annotations

EnsemblPlants:CDX97380	EnsemblPlantsGene:GSBRNA2T00104484001	Gene3D:1.10.110.10	GO:A0A078E5N0	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Napin	PANTHER:PTHR35496	PFAM:PF00234	PRINTS:PR00496
ProteinID:CDX97380	ProteinID:CDX97380.1	SMART:SM00499	SUPFAM:SSF47699	UniParc:UPI0004EF2015	MapMan:35.1

Description

BnaC08g12450D

Coordinates

chrLK031899:+:189969..190391

Molecular Weight (calculated)

13790.7 Da

IEP (calculated)

5.554

GRAVY (calculated)

-0.203

Length

120 amino acids

Sequence
(BLAST)

001: MQATQPPSGP RALEFEDDIE NPQGPQLKVT LFQQCCNELR QEDTICVCPA LKHVSEEVRI QFEQEQHQGL PQIVSRIYQT AKQLPKFCKI LNQTLWSVYI
101: TAMSVVVHEC YHYTVIACVL

Best Arabidopsis Sequence Match ( AT4G27170.1 )
(BLAST)

001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY

Arabidopsis Description

AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.