CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 8
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	endoplasmic reticulum, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019064.1-P	Field mustard	extracellular, vacuole	100.0	100.0
CDX92819	Canola	endoplasmic reticulum, extracellular	99.37	99.37
CDX89273	Canola	cytosol	58.86	54.07
CDY46662	Canola	vacuole	58.86	53.76
CDY29280	Canola	vacuole	58.86	53.76
CDY29281	Canola	vacuole	58.86	53.76
CDX89271	Canola	vacuole	58.23	53.49
CDX89275	Canola	vacuole	58.23	53.49
CDX70800	Canola	vacuole	59.49	53.41
CDY29278	Canola	vacuole	57.59	52.91
CDY32264	Canola	cytosol	59.49	52.51
CDX89270	Canola	vacuole	41.77	52.38
CDY29279	Canola	vacuole	58.86	51.67
CDY61462	Canola	vacuole	57.59	50.56
CDY51244	Canola	cytosol	58.23	49.46
AT5G54740.1	Thale cress	extracellular, vacuole	51.27	49.09
CDX97380	Canola	cytosol	23.42	30.83
CDY14281	Canola	cytosol, nucleus, plastid	21.52	28.33

Protein Annotations

EnsemblPlants:CDY46659	EnsemblPlantsGene:GSBRNA2T00085954001	Gene3D:1.10.110.10	GO:A0A078IBF3	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Napin	PANTHER:PTHR35496	PFAM:PF00234	PRINTS:PR00496
ProteinID:CDY46659	ProteinID:CDY46659.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699
TMHMM:TMhelix	UniParc:UPI000254126F	UniProt:A0A078IBF3	MapMan:35.1	:	:

Description

BnaA03g48490DBnaA03g48490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBF3]

Coordinates

chrLK032681:-:26698..27174

Molecular Weight (calculated)

18074.6 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.397

Length

158 amino acids

Sequence
(BLAST)

001: MANKIFLVCA TLAFCVLLTN ASIYRTVVEF DEDDTTDQIG PFRPPQKCQR EFQQEQHLRA CQQWIRQQLA GSPFSENQWG PQQGPSLREQ CCNELYQEDQ
101: VCVCPTLKQA AKSVRVQGQH GPFQSTRIYQ IAKNLPNVCN MKQIGTCPFI AIPFFPPY

Best Arabidopsis Sequence Match ( AT4G27160.1 )
(BLAST)

001: MANKLFLVCA TLALCFLLTN ASIYRTVVEF EEDDASNPVG PRQRCQKEFQ QSQHLRACQR WMSKQMRQGR GGGPSLDDEF DFEGPQQGYQ LLQQCCNELR
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY

Arabidopsis Description

AT2S32S seed storage protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P15459]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.