CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX84933
CDX95198
CDX95199
CDY03907
CDY15722
CDY27605
CDY42355
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27140.1	CDX84933	AT1G27300.1	21798944
AT4G27140.1	CDY03907	AT1G27300.1	21798944
AT4G27140.1	CDY15722	AT1G27300.1	21798944
AT4G27140.1	CDY27605	AT1G27300.1	21798944
AT4G27140.1	CDX95198	AT5G42220.1	21798944
AT4G27140.1	CDX95199	AT5G42220.1	21798944
AT4G27140.1	CDY42355	AT5G42220.1	21798944
AT4G27160.1	CDX74635	AT5G35750.1	18642946
AT4G27160.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026372.1-P	Field mustard	extracellular	96.03	99.18
CDY29281	Canola	vacuole	96.03	69.94
CDX89271	Canola	vacuole	93.65	68.6
CDX89273	Canola	cytosol	92.86	68.02
CDY29280	Canola	vacuole	92.86	67.63
CDX89275	Canola	vacuole	92.06	67.44
CDY29278	Canola	vacuole	89.68	65.7
CDX70800	Canola	vacuole	91.27	65.34
CDY32264	Canola	cytosol	92.06	64.8
CDY61462	Canola	vacuole	89.68	62.78
CDY29279	Canola	vacuole	89.68	62.78
CDY51244	Canola	cytosol	92.06	62.37
CDY46662	Canola	vacuole	70.63	51.45
AT4G27140.1	Thale cress	extracellular, vacuole	57.94	44.51
AT4G27170.1	Thale cress	extracellular, vacuole	57.94	43.98
AT4G27160.1	Thale cress	extracellular, vacuole	57.14	43.9
AT4G27150.1	Thale cress	extracellular	57.94	42.94
CDY46659	Canola	cytosol	52.38	41.77
CDX92819	Canola	endoplasmic reticulum, extracellular	51.59	41.14
CDY14281	Canola	cytosol, nucleus, plastid	19.84	20.83
CDX97380	Canola	cytosol	18.25	19.17

Protein Annotations

EnsemblPlants:CDX89270	EnsemblPlantsGene:GSBRNA2T00149482001	Gene3D:1.10.110.10	GO:A0A078DJA2	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Napin	PANTHER:PTHR35496	PRINTS:PR00496	ProteinID:CDX89270	ProteinID:CDX89270.1
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF47699	TMHMM:TMhelix	UniParc:UPI0004EDE488	MapMan:35.1

Description

BnaA01g16230D

Coordinates

chrLK031858:-:647332..648054

Molecular Weight (calculated)

14205.0 Da

IEP (calculated)

8.956

GRAVY (calculated)

-0.367

Length

126 amino acids

Sequence
(BLAST)

001: MANKLFLVSA TLAFFFLLTN ASVYRTVVEV DEDATNPAGP FRIPKCRKEF QQAQHLKACQ QWLHKQAMQS GSGPSWTLDG QQGQQGQQMQ QVVSRIYETA
101: THLPRVCNIP QVSICPFQKT TPGPYY

Best Arabidopsis Sequence Match ( AT4G27160.1 )
(BLAST)

001: MANKLFLVCA TLALCFLLTN ASIYRTVVEF EEDDASNPVG PRQRCQKEFQ QSQHLRACQR WMSKQMRQGR GGGPSLDDEF DFEGPQQGYQ LLQQCCNELR
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY

Arabidopsis Description

AT2S32S seed storage protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P15459]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.