Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019064.1-P | Field mustard | extracellular, vacuole | 99.37 | 99.37 |
| CDY46659 | Canola | cytosol | 99.37 | 99.37 |
| CDX89273 | Canola | cytosol | 58.23 | 53.49 |
| CDY46662 | Canola | vacuole | 58.23 | 53.18 |
| CDY29281 | Canola | vacuole | 58.23 | 53.18 |
| CDY29280 | Canola | vacuole | 58.23 | 53.18 |
| CDX89271 | Canola | vacuole | 57.59 | 52.91 |
| CDX89275 | Canola | vacuole | 57.59 | 52.91 |
| CDX70800 | Canola | vacuole | 58.86 | 52.84 |
| CDY29278 | Canola | vacuole | 56.96 | 52.33 |
| CDY32264 | Canola | cytosol | 58.86 | 51.96 |
| CDX89270 | Canola | vacuole | 41.14 | 51.59 |
| CDY29279 | Canola | vacuole | 58.23 | 51.11 |
| CDY61462 | Canola | vacuole | 56.96 | 50.0 |
| CDY51244 | Canola | cytosol | 57.59 | 48.92 |
| AT5G54740.1 | Thale cress | extracellular, vacuole | 50.63 | 48.48 |
| CDX97380 | Canola | cytosol | 23.42 | 30.83 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 21.52 | 28.33 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | GO:A0A078DWJ7 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | unigene:Bna.2425 |
| EnsemblPlants:CDX92819 | ProteinID:CDX92819 | ProteinID:CDX92819.1 | GO:GO:0003674 | GO:GO:0045735 | EnsemblPlantsGene:GSBRNA2T00154648001 |
| InterPro:Napin | PFAM:PF00234 | PRINTS:PR00496 | PANTHER:PTHR35496 | SMART:SM00499 | SUPFAM:SSF47699 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE992B | SEG:seg | : | : |
Description
BnaC07g40770D
Coordinates
chrLK031873:+:935058..935534
Molecular Weight (calculated)
18108.7 Da
IEP (calculated)
7.573
GRAVY (calculated)
-0.403
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKIFLVCA TFAFCVLLTN ASIYRTVVEF DEDDTTDQIG PFRPPQKCQR EFQQEQHLRA CQQWIRQQLA GSPFSENQWG PQQGPSLREQ CCNELYQEDQ
101: VCVCPTLKQA AKSVRVQGQH GPFQSTRIYQ IAKNLPNVCN MKQIGTCPFI AIPFFPPY
101: VCVCPTLKQA AKSVRVQGQH GPFQSTRIYQ IAKNLPNVCN MKQIGTCPFI AIPFFPPY
001: MANKLFLVCA TLALCFLLTN ASIYRTVVEF EEDDASNPVG PRQRCQKEFQ QSQHLRACQR WMSKQMRQGR GGGPSLDDEF DFEGPQQGYQ LLQQCCNELR
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY
Arabidopsis Description
AT2S32S seed storage protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P15459]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.