CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX84933
CDX95198
CDX95199
CDY03907
CDY15722
CDY27605
CDY42355
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27140.1	CDX84933	AT1G27300.1	21798944
AT4G27140.1	CDY03907	AT1G27300.1	21798944
AT4G27140.1	CDY15722	AT1G27300.1	21798944
AT4G27140.1	CDY27605	AT1G27300.1	21798944
AT4G27140.1	CDX95198	AT5G42220.1	21798944
AT4G27140.1	CDX95199	AT5G42220.1	21798944
AT4G27140.1	CDY42355	AT5G42220.1	21798944
AT4G27160.1	CDX74635	AT5G35750.1	18642946
AT4G27160.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89271	Canola	vacuole	98.84	99.42
CDX89275	Canola	vacuole	97.11	97.67
CDY29281	Canola	vacuole	97.11	97.11
CDY29278	Canola	vacuole	96.53	97.09
CDX89273	Canola	cytosol	96.53	97.09
Bra026373.1-P	Field mustard	vacuole	98.27	93.41
CDY61462	Canola	vacuole	97.11	93.33
CDX89270	Canola	vacuole	67.63	92.86
CDY32264	Canola	cytosol	95.95	92.74
CDX70800	Canola	vacuole	91.91	90.34
CDY29279	Canola	vacuole	90.75	87.22
CDY51244	Canola	cytosol	93.06	86.56
CDY46662	Canola	vacuole	73.99	73.99
AT4G27140.1	Thale cress	extracellular, vacuole	64.16	67.68
AT4G27170.1	Thale cress	extracellular, vacuole	61.85	64.46
AT4G27160.1	Thale cress	extracellular, vacuole	60.69	64.02
AT4G27150.1	Thale cress	extracellular	60.69	61.76
CDY46659	Canola	cytosol	53.76	58.86
CDX92819	Canola	endoplasmic reticulum, extracellular	53.18	58.23
CDY14281	Canola	cytosol, nucleus, plastid	29.48	42.5
CDX97380	Canola	cytosol	28.9	41.67

Protein Annotations

EnsemblPlants:CDY29280	EnsemblPlantsGene:GSBRNA2T00042222001	Gene3D:1.10.110.10	GO:A0A078GS24	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Napin	PANTHER:PTHR35496	PFAM:PF00234	PRINTS:PR00496
ProteinID:CDY29280	ProteinID:CDY29280.1	SEG:seg	SignalP:SignalP-noTM	SMART:SM00499	SUPFAM:SSF47699
TMHMM:TMhelix	UniParc:UPI0004EDC12C	UniProt:A0A078GS24	MapMan:35.1	:	:

Description

BnaC01g19320DBnaC01g19320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS24]

Coordinates

chrLK032234:+:193218..193946

Molecular Weight (calculated)

19480.3 Da

IEP (calculated)

6.876

GRAVY (calculated)

-0.481

Length

173 amino acids

Sequence
(BLAST)

001: MANKLFLVSA TLAFFFLLTN ASVYRTVVEV DEDDATNPAG PFRIPKCRKE FQQAQHLRAC QQWLHKQAMQ SGSGPSWTLD GEFDFDDDME NPQGPQQRPP
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QQGQQLQQVI SRIYQTATHL PKVCNIPQVS VCPFQKTMPG PSY

Best Arabidopsis Sequence Match ( AT4G27170.1 )
(BLAST)

001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY

Arabidopsis Description

AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.