CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDX84933
CDX95198
CDX95199
CDY03907
CDY15722
CDY27605
CDY42355
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27140.1	CDX84933	AT1G27300.1	21798944
AT4G27140.1	CDY03907	AT1G27300.1	21798944
AT4G27140.1	CDY15722	AT1G27300.1	21798944
AT4G27140.1	CDY27605	AT1G27300.1	21798944
AT4G27140.1	CDX95198	AT5G42220.1	21798944
AT4G27140.1	CDX95199	AT5G42220.1	21798944
AT4G27140.1	CDY42355	AT5G42220.1	21798944
AT4G27160.1	CDX74635	AT5G35750.1	18642946
AT4G27160.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97380	Canola	cytosol	91.67	91.67
Bra010409.1-P	Field mustard	vacuole	74.17	52.05
CDY32264	Canola	cytosol	46.67	31.28
CDX89275	Canola	vacuole	43.33	30.23
CDX89271	Canola	vacuole	42.5	29.65
CDX89273	Canola	cytosol	42.5	29.65
CDY29278	Canola	vacuole	42.5	29.65
CDY29280	Canola	vacuole	42.5	29.48
AT4G27140.1	Thale cress	extracellular, vacuole	40.0	29.27
CDY29281	Canola	vacuole	41.67	28.9
CDY61462	Canola	vacuole	43.33	28.89
CDY29279	Canola	vacuole	43.33	28.89
CDX70800	Canola	vacuole	41.67	28.41
CDY51244	Canola	cytosol	42.5	27.42
CDY46662	Canola	vacuole	37.5	26.01
AT4G27150.1	Thale cress	extracellular	35.0	24.71
AT4G27170.1	Thale cress	extracellular, vacuole	34.17	24.7
AT4G27160.1	Thale cress	extracellular, vacuole	32.5	23.78
CDX92819	Canola	endoplasmic reticulum, extracellular	28.33	21.52
CDY46659	Canola	cytosol	28.33	21.52
CDX89270	Canola	vacuole	20.83	19.84

Protein Annotations

EnsemblPlants:CDY14281	EnsemblPlantsGene:GSBRNA2T00078872001	Gene3D:1.10.110.10	GO:A0A078FMD5	GO:GO:0003674	GO:GO:0045735
InterPro:Bifun_inhib/LTP/seed_sf	InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Napin	PANTHER:PTHR35496	PFAM:PF00234	PRINTS:PR00496
ProteinID:CDY14281	ProteinID:CDY14281.1	SUPFAM:SSF47699	UniParc:UPI0004EECBFB	UniProt:A0A078FMD5	MapMan:35.1

Description

BnaA08g14120DBnaA08g14120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FMD5]

Coordinates

chrLK032041:-:649743..650165

Molecular Weight (calculated)

13759.4 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.333

Length

120 amino acids

Sequence
(BLAST)

001: MQATQPPSGP RALEFEDDNE NPQGSQLKAT LFQQCCNELR QEDKICVCPA LKHVSEEVRI QFEQEQHQGL PQIVSRIYQT ATQLPKFCKI PNQTLWSVYT
101: TVMSVVVDEC YHYTVIVCVL

Best Arabidopsis Sequence Match ( AT4G27170.1 )
(BLAST)

001: MANKLFLVCA ALALCFILTN ASVYRTVVEF DEDDASNPIG PIQKCQKEFQ QDQHLRACQR WMRKQMWQGR GGGPSLDDEF DMEDDIENPQ RRQLLQKCCS
101: ELRQEEPVCV CPTLRQAAKA VRFQGQQHQP EQVRKIYQAA KYLPNICKIQ QVGVCPFQIP SIPSYY

Arabidopsis Description

AT2S42S seed storage protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P15460]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.