Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 8
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14281 | Canola | cytosol, nucleus, plastid | 52.05 | 74.17 |
| CDX97380 | Canola | cytosol | 49.71 | 70.83 |
| Bra038483.1-P | Field mustard | vacuole | 67.25 | 64.25 |
| Bra026372.1-P | Field mustard | extracellular | 45.03 | 63.11 |
| Bra026375.1-P | Field mustard | vacuole | 64.33 | 61.11 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 57.89 | 60.37 |
| Bra019067.1-P | Field mustard | vacuole | 59.65 | 58.96 |
| Bra026373.1-P | Field mustard | vacuole | 62.57 | 58.79 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 54.97 | 57.32 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 55.56 | 57.23 |
| Bra026374.1-P | Field mustard | vacuole | 64.33 | 56.7 |
| Bra006444.1-P | Field mustard | vacuole | 60.82 | 56.52 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 52.05 | 56.33 |
| AT4G27150.1 | Thale cress | extracellular | 55.56 | 55.88 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlantsGene:Bra010409 | EnsemblPlants:Bra010409.1 |
| EnsemblPlants:Bra010409.1-P | GO:GO:0003674 | GO:GO:0045735 | UniProt:M4D1Q9 | InterPro:Napin | PFAM:PF00234 |
| PRINTS:PR00496 | PANTHER:PTHR35496 | SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000254569A | SEG:seg | : | : | : | : |
Description
AT4G27140 (E=3e-040) | 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1
Coordinates
chrA08:-:14389240..14389755
Molecular Weight (calculated)
19796.7 Da
IEP (calculated)
6.334
GRAVY (calculated)
-0.365
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFFLLT NASIYRTVVE FDEDNQIGPF GPQQCQKEFE QTQHLRACQQ WIHMQATQPP SGPRALEFEV DIENPQGSQL KATLFQQCCN
101: ELRQEDKICV CPALKHVSKE VRIQFEQEQH QGLPQIVSRI YQTATQLPKF CKVPQVSVCP FQHDMPFPPY Y
101: ELRQEDKICV CPALKHVSKE VRIQFEQEQH QGLPQIVSRI YQTATQLPKF CKVPQVSVCP FQHDMPFPPY Y
001: MAKLILVFAT LALFILLANA SIYRTVVEFE EDDDVSNPQQ GKCQREFMKH QQLRGCKQWI RKRAQQGRIG YEADDFELTL DVDLEDDENP MGPQQQSSLK
101: MCCNELRQVD KMCVCPTLKK AAQQVRFQGM HGQQQVQHVF QTAKNLPNVC KIPTVGSCQF KASPY
101: MCCNELRQVD KMCVCPTLKK AAQQVRFQGM HGQQQVQHVF QTAKNLPNVC KIPTVGSCQF KASPY
Arabidopsis Description
SESA5SESA5 [Source:UniProtKB/TrEMBL;Acc:A0A178UNV4]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.