Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89270 | Canola | vacuole | 99.18 | 96.03 |
| Bra026373.1-P | Field mustard | vacuole | 94.26 | 63.19 |
| Bra038483.1-P | Field mustard | vacuole | 91.8 | 62.57 |
| Bra026375.1-P | Field mustard | vacuole | 91.8 | 62.22 |
| Bra006444.1-P | Field mustard | vacuole | 91.8 | 60.87 |
| Bra026374.1-P | Field mustard | vacuole | 92.62 | 58.25 |
| Bra019067.1-P | Field mustard | vacuole | 71.31 | 50.29 |
| Bra010409.1-P | Field mustard | vacuole | 63.11 | 45.03 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 59.02 | 43.37 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 57.38 | 42.68 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 57.38 | 42.68 |
| AT4G27150.1 | Thale cress | extracellular | 57.38 | 41.18 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 52.46 | 40.51 |
Protein Annotations
| EnsemblPlants:Bra026372.1 | EnsemblPlants:Bra026372.1-P | EnsemblPlantsGene:Bra026372 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Napin | PANTHER:PTHR35496 | PRINTS:PR00496 | SignalP:SignalP-noTM | SUPFAM:SSF47699 |
| TMHMM:TMhelix | UniParc:UPI0002545AFD | UniProt:M4EC63 | MapMan:35.1 | : | : |
Description
AT4G27160 (E=8e-023) AT2S3 | AT2S3; lipid binding / nutrient reservoir
Coordinates
chrA01:+:9674153..9686825
Molecular Weight (calculated)
13764.5 Da
IEP (calculated)
8.641
GRAVY (calculated)
-0.290
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASVYRTVVEV DEDATNPAGP FRIPKCRKEF QQAQHLKACQ QWLHKQAMQS GSGPSWTLDG EGQQMQQVVS RIYETATHLP
101: RVCNIPQVSI CPFQKTTPGP YY
101: RVCNIPQVSI CPFQKTTPGP YY
001: MANKLFLVCA TLALCFLLTN ASIYRTVVEF EEDDASNPVG PRQRCQKEFQ QSQHLRACQR WMSKQMRQGR GGGPSLDDEF DFEGPQQGYQ LLQQCCNELR
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY
101: QEEPVCVCPT LKQAARAVSL QGQHGPFQSR KIYQSAKYLP NICKIQQVGE CPFQTTIPFF PPYY
Arabidopsis Description
AT2S32S seed storage protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P15459]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.