Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 6
- vacuole 8
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027974.1-P | |
| Bra030034.1-P | |
| Bra032817.1-P | |
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G27140.1 | Bra030034.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra032817.1-P | AT1G27300.1 | 21798944 |
| AT4G27140.1 | Bra027974.1-P | AT5G42220.1 | 21798944 |
| AT4G27160.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89275 | Canola | vacuole | 95.56 | 100.0 |
| Bra026373.1-P | Field mustard | vacuole | 96.67 | 95.6 |
| Bra038483.1-P | Field mustard | vacuole | 94.44 | 94.97 |
| Bra026372.1-P | Field mustard | extracellular | 62.22 | 91.8 |
| Bra026374.1-P | Field mustard | vacuole | 96.67 | 89.69 |
| Bra006444.1-P | Field mustard | vacuole | 91.67 | 89.67 |
| Bra019067.1-P | Field mustard | vacuole | 72.78 | 75.72 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 61.67 | 67.68 |
| Bra010409.1-P | Field mustard | vacuole | 61.11 | 64.33 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 58.33 | 64.02 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 58.33 | 63.25 |
| AT4G27150.1 | Thale cress | extracellular | 58.33 | 61.76 |
| Bra019064.1-P | Field mustard | extracellular, vacuole | 51.11 | 58.23 |
Protein Annotations
| Gene3D:1.10.110.10 | MapMan:35.1 | InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | EnsemblPlantsGene:Bra026375 | EnsemblPlants:Bra026375.1 |
| EnsemblPlants:Bra026375.1-P | GO:GO:0003674 | GO:GO:0045735 | UniProt:M4EC66 | InterPro:Napin | PFAM:PF00234 |
| PRINTS:PR00496 | PANTHER:PTHR35496 | SMART:SM00499 | SUPFAM:SSF47699 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI0000124EB8 | SEG:seg | : | : | : | : |
Description
AT4G27140 (E=1e-046) | 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1
Coordinates
chrA01:+:9653558..9654100
Molecular Weight (calculated)
20319.3 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.537
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASIYRTIVEV DEDDATNPAG PFRIPKCRKE FQQAQHLKAC QQWLHKQAMQ SGSGPSWTLD GEFDFEDDME NPQGPQQRPP
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QVRQQQGQQG QQLQQVISRI YQTATHLPKV CNIPQVSVCP FQKTMPGPSY
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKQ QVRQQQGQQG QQLQQVISRI YQTATHLPKV CNIPQVSVCP FQKTMPGPSY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.