Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29281 | Canola | vacuole | 88.89 | 92.49 |
| CDY29280 | Canola | vacuole | 87.22 | 90.75 |
| CDX89271 | Canola | vacuole | 86.11 | 90.12 |
| CDX89273 | Canola | cytosol | 86.11 | 90.12 |
| CDX89275 | Canola | vacuole | 86.11 | 90.12 |
| CDX89270 | Canola | vacuole | 62.78 | 89.68 |
| CDY29278 | Canola | vacuole | 85.56 | 89.53 |
| CDY32264 | Canola | cytosol | 88.33 | 88.83 |
| CDY61462 | Canola | vacuole | 87.22 | 87.22 |
| CDX70800 | Canola | vacuole | 83.33 | 85.23 |
| CDY51244 | Canola | cytosol | 86.67 | 83.87 |
| CDY46662 | Canola | vacuole | 70.56 | 73.41 |
| AT4G27140.1 | Thale cress | extracellular, vacuole | 63.33 | 69.51 |
| AT4G27170.1 | Thale cress | extracellular, vacuole | 60.56 | 65.66 |
| AT4G27160.1 | Thale cress | extracellular, vacuole | 58.33 | 64.02 |
| AT4G27150.1 | Thale cress | extracellular | 58.33 | 61.76 |
| CDY46659 | Canola | cytosol | 51.67 | 58.86 |
| CDX92819 | Canola | endoplasmic reticulum, extracellular | 51.11 | 58.23 |
| CDY14281 | Canola | cytosol, nucleus, plastid | 28.89 | 43.33 |
| CDX97380 | Canola | cytosol | 28.33 | 42.5 |
Protein Annotations
| EnsemblPlants:CDY29279 | EnsemblPlantsGene:GSBRNA2T00042221001 | Gene3D:1.10.110.10 | GO:A0A078GVU3 | GO:GO:0003674 | GO:GO:0045735 |
| InterPro:Bifun_inhib/LTP/seed_sf | InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Napin | PANTHER:PTHR35496 | PFAM:PF00234 | PRINTS:PR00496 |
| ProteinID:CDY29279 | ProteinID:CDY29279.1 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 |
| TMHMM:TMhelix | UniParc:UPI0004EF4D54 | UniProt:A0A078GVU3 | MapMan:35.1 | : | : |
Description
BnaC01g19310DBnaC01g19310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVU3]
Coordinates
chrLK032234:+:183982..184741
Molecular Weight (calculated)
20196.2 Da
IEP (calculated)
7.989
GRAVY (calculated)
-0.514
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MANKLFLVSA TLAFFFLLTN ASVYRTVVEV DEDDATNPGG PFRIPKCRKE FQQAQHLRAC QQWLHKQAMQ SGSGPSLALA GEFDFEDDME NPQGSQQRPP
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKS RVQQQGQMQG QQQQQIVGRI YQTAKHLPRV CNIPQVSVCP FQKTTPGPYY
101: LLQQCCNELH QEEPLCVCPT LKGASKAVKS RVQQQGQMQG QQQQQIVGRI YQTAKHLPRV CNIPQVSVCP FQKTTPGPYY
001: MANKLFLVCA ALALCFLLTN ASIYRTVVEF EEDDATNPIG PKMRKCRKEF QKEQHLRACQ QLMLQQARQG RSDEFDFEDD MENPQGQQQE QQLFQQCCNE
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
101: LRQEEPDCVC PTLKQAAKAV RLQGQHQPMQ VRKIYQTAKH LPNVCDIPQV DVCPFNIPSF PSFY
Arabidopsis Description
AT2S12S seed storage protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P15457]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.