CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031085.1-P	Field mustard	nucleus	98.22	98.61
CDX81933	Canola	nucleus	93.28	97.52
CDY03358	Canola	nucleus	93.48	93.85
CDY48711	Canola	nucleus	93.08	93.64
CDY29763	Canola	endoplasmic reticulum	61.26	91.99
AT2G19520.1	Thale cress	nucleus	91.11	90.93
CDY70287	Canola	nucleus	32.81	90.71
CDY35867	Canola	cytosol	48.22	85.92
CDX82696	Canola	nucleus	74.7	85.91
KRH12388	Soybean	nucleus	79.84	79.53
GSMUA_Achr4P08720_001	Banana	cytosol	63.64	79.12
KRH37388	Soybean	nucleus	80.04	78.95
EES01357	Sorghum	nucleus	69.57	77.7
Os01t0710000-01	Rice	nucleus	68.58	76.6
CDY06779	Canola	nucleus	72.92	76.08
CDY43523	Canola	nucleus	70.75	75.37
TraesCS3B01G280400.1	Wheat	nucleus	69.96	75.16
TraesCS3A01G250900.2	Wheat	cytosol	69.96	75.16
TraesCS3D01G251300.2	Wheat	nucleus	69.76	74.95
Zm00001d052871_P001	Maize	cytosol	4.35	73.33
VIT_11s0016g02170.t01	Wine grape	nucleus	73.52	73.23
HORVU3Hr1G066930.1	Barley	plastid	71.15	70.73
Zm00001d043683_P001	Maize	cytosol	28.46	69.9
Solyc07g039330.2.1	Tomato	nucleus	51.98	69.76
Zm00001d011705_P002	Maize	cytosol	68.18	66.35
Zm00001d043682_P002	Maize	cytosol, plastid	68.18	65.22
GSMUA_Achr3P32330_001	Banana	cytosol	23.12	65.0
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	27.47	60.43
GSMUA_Achr7P09120_001	Banana	nucleus	53.75	59.78
GSMUA_Achr7P24160_001	Banana	nucleus	27.87	58.75
Zm00001d050047_P001	Maize	nucleus	21.54	39.49
CDY43875	Canola	nucleus	28.06	33.33
CDY62688	Canola	nucleus	27.87	33.1
CDY02805	Canola	nucleus	26.88	32.46
CDY47479	Canola	cytosol	26.28	32.13
CDY32715	Canola	nucleus	26.28	31.97
CDY26787	Canola	cytosol	26.09	31.88
CDY70131	Canola	cytosol	11.86	28.71
CDY03357	Canola	plastid	21.94	23.47
CDY48712	Canola	plastid	21.74	23.35
CDY21659	Canola	nucleus	21.74	23.26
CDX81935	Canola	nucleus	21.74	23.16
CDX88663	Canola	nucleus	27.87	22.17
CDY58569	Canola	cytosol	27.87	22.17
CDX82701	Canola	nucleus	16.4	21.39
CDY43325	Canola	cytosol	13.24	21.14
CDX90175	Canola	cytosol	13.24	21.14
CDY35872	Canola	cytosol, nucleus, plastid	14.03	20.88
CDY50786	Canola	cytosol	13.04	20.82
CDX99799	Canola	cytosol	13.04	20.82

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A078G8E8	EnsemblPlants:CDY21661	ProteinID:CDY21661	ProteinID:CDY21661.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00016146001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE3F65	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaA09g44120DBnaA09g44120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8E8]

Coordinates

chrLK032123:-:41449..44614

Molecular Weight (calculated)

55771.9 Da

IEP (calculated)

5.717

GRAVY (calculated)

-0.611

Length

506 amino acids

Sequence
(BLAST)

001: MESEEAEVAA AGAASPSGGN VTSAPKKRGR KPKSKEESQT QEERGGKMKE SGKKTKQEEQ SVDEKYTQWK GLVPILYDWL ANHNLVWPSL SCRWGPQLEQ
101: ATYKNRQRLY LSEQTDGSVP NTLVIANCEV VKPRVAAAEH ISQFNEEARS PFVKKFKTII HPGEVNRIRE LPQNSKIIAT HTDSPDVLIW DVETQPNRHA
201: VLGAATSRPD LILTGHQDNA EYALAMCPTE PFVLSGGKDK SVVLWSIQDH ITTAASTDSK SSGSIIKQTG EGGDKTESPS LGPRGVYHGH DDTVEDVAFS
301: PTSAQEFCSV GDDSCLILWD ARTGTSPVTK VEKAHDADLH CVDWNPHDDN LILTGSADNT VRLYDRRNLT SNGVGTPIYK FEGHKAAVLC VQWSPDKSSV
401: FGSSAEDGLL NIWDYDRVSK KTDRSAKSPA GLFFQHAGHR DKVVDFHWNA EDPWTIVSVS DDCETTGGGG TLQIWRMSDL IYRPEEEVLA ELEKFKSHVM
501: TCASKP

Best Arabidopsis Sequence Match ( AT2G19520.1 )
(BLAST)

001: MESDEAAAVS PQATTPSGGT GASGPKKRGR KPKTKEDSQT PSSQQQSDVK MKESGKKTQQ SPSVDEKYSQ WKGLVPILYD WLANHNLVWP SLSCRWGPQL
101: EQATYKNRQR LYLSEQTDGS VPNTLVIANC EVVKPRVAAA EHISQFNEEA RSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDVL IWDVETQPNR
201: HAVLGAANSR PDLILTGHQD NAEFALAMCP TEPFVLSGGK DKSVVLWSIQ DHITTIGTDS KSSGSIIKQT GEGTDKNESP TVGPRGVYHG HEDTVEDVAF
301: SPTSAQEFCS VGDDSCLILW DARTGTNPVT KVEKAHDADL HCVDWNPHDD NLILTGSADN TVRLFDRRKL TANGVGSPIY KFEGHKAAVL CVQWSPDKSS
401: VFGSSAEDGL LNIWDYDRVS KKSDRAAKSP AGLFFQHAGH RDKVVDFHWN ASDPWTIVSV SDDCETTGGG GTLQIWRMSD LIYRPEEEVV AELEKFKSHV
501: MTCASKP

Arabidopsis Description

MSI4NFC4 [Source:UniProtKB/TrEMBL;Acc:A0A178VX04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.