CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011133.1-P	Field mustard	nucleus	98.53	98.32
CDY06779	Canola	nucleus	94.95	92.99
AT4G29730.1	Thale cress	nucleus	78.74	76.8
CDY29763	Canola	endoplasmic reticulum	54.11	76.26
CDX81933	Canola	nucleus	74.74	73.35
Zm00001d052871_P001	Maize	cytosol	4.63	73.33
CDY48711	Canola	nucleus	75.16	70.97
CDY03358	Canola	nucleus	75.16	70.83
GSMUA_Achr4P08720_001	Banana	cytosol	60.63	70.76
CDY21661	Canola	nucleus	75.37	70.75
CDY35867	Canola	cytosol	41.89	70.07
EES01357	Sorghum	nucleus	65.89	69.09
KRH12388	Soybean	nucleus	73.26	68.5
KRH37388	Soybean	nucleus	73.26	67.84
Os01t0710000-01	Rice	nucleus	64.63	67.77
TraesCS3B01G280400.1	Wheat	nucleus	66.53	67.09
TraesCS3A01G250900.2	Wheat	cytosol	66.53	67.09
TraesCS3D01G251300.2	Wheat	nucleus	66.32	66.88
CDX82696	Canola	nucleus	60.0	64.77
Solyc07g039330.2.1	Tomato	nucleus	50.74	63.93
HORVU3Hr1G066930.1	Barley	plastid	67.79	63.26
VIT_11s0016g02170.t01	Wine grape	nucleus	67.58	63.19
CDY70287	Canola	nucleus	22.95	59.56
Zm00001d011705_P002	Maize	cytosol	63.79	58.27
Zm00001d043683_P001	Maize	cytosol	24.84	57.28
Zm00001d043682_P002	Maize	cytosol, plastid	63.79	57.28
GSMUA_Achr7P24160_001	Banana	nucleus	28.42	56.25
Zm00001d053451_P001	Maize	cytosol, nucleus, plastid	26.95	55.65
GSMUA_Achr7P09120_001	Banana	nucleus	52.84	55.16
GSMUA_Achr3P32330_001	Banana	cytosol	20.63	54.44
Zm00001d050047_P001	Maize	nucleus	20.63	35.51
CDY26787	Canola	cytosol	28.0	32.13
CDY47479	Canola	cytosol	28.0	32.13
CDY32715	Canola	nucleus	27.58	31.49
CDY62688	Canola	nucleus	28.21	31.46
CDY43875	Canola	nucleus	28.21	31.46
CDY02805	Canola	nucleus	27.37	31.03
CDY70131	Canola	cytosol	12.21	27.75
CDY48712	Canola	plastid	22.32	22.51
CDY03357	Canola	plastid	22.32	22.41
CDX81935	Canola	nucleus	22.32	22.32
CDY21659	Canola	nucleus	22.11	22.2
CDY43325	Canola	cytosol	14.53	21.77
CDX90175	Canola	cytosol	14.53	21.77
CDY58569	Canola	cytosol	28.84	21.54
CDX88663	Canola	nucleus	28.84	21.54
CDY35872	Canola	cytosol, nucleus, plastid	15.37	21.47
CDY50786	Canola	cytosol	14.32	21.45
CDX99799	Canola	cytosol	14.32	21.45
CDX82701	Canola	nucleus	16.84	20.62

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	UniProt:A0A078I374	EnsemblPlants:CDY43523	ProteinID:CDY43523	ProteinID:CDY43523.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00076807001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF184
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE4271	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaA01g07210DBnaA01g07210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I374]

Coordinates

chrLK032560:-:102042..105158

Molecular Weight (calculated)

52405.5 Da

IEP (calculated)

7.587

GRAVY (calculated)

-0.498

Length

475 amino acids

Sequence
(BLAST)

001: MESEVAAKAR REAETPATYI GLKTRGQRAK LNNGSVSASL QQQRSTEKKR KSHKAIVDNK YSQWKTLVPI LYDSLSNQSL VWPCLSCRWG PQFEQALAKN
101: QQRLYLTEQT NGSVPNTLVV ATCEAVKKQL NGKTCSPFVK KYKTIIHPGE VNRIRELPQN SKIVATHTDS PDVLIWDTET QPDRHAVLGA PHSRPDLILT
201: GHQNNAEFAL AMFPTEPFVL SGGKDKSVVL WSIQDHITTA GSNKTGGRSV GPRGVYHGHE DTVEDVAFCP SSAQEFCSVG DDSCLILWDA RTGSGPAMKV
301: EKAHDADLHC VDWNPHDNNL ILTGSADNTV RLFDRRNLTS NGVGSPIYKF EGHNASVLSV QWSPDKSSVF GSSAEDGLLN IWDYDKLGKK SARAPKSPPG
401: LFFQHAGHRD NVVDFHWNVL EPWTIVSVSG NCESNGGGGT LQIWRMSGLI YRPEDEVLAE LENFKSQVFS CASRP

Best Arabidopsis Sequence Match ( AT4G29730.1 )
(BLAST)

001: MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL
101: YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD
201: DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW
301: DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG
401: KKSERATKTP DGLFFQHAGH RDKVVDFHWS LLNPWTIVSV SDNCESIGGG GTLQIWRMSD LIYRPEDEVL TELEKFKSHV FTCTSKS

Arabidopsis Description

MSI5WD-40 repeat-containing protein MSI5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU78]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.