Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020379.1-P | Field mustard | cytosol | 99.76 | 99.76 |
| CDY02805 | Canola | nucleus | 89.9 | 89.26 |
| AT5G58230.1 | Thale cress | nucleus | 81.73 | 80.19 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 78.61 | 77.12 |
| PGSC0003DMT400061016 | Potato | cytosol | 78.37 | 76.89 |
| Solyc01g104510.2.1 | Tomato | nucleus | 77.88 | 76.42 |
| CDY43875 | Canola | nucleus | 77.4 | 75.59 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 76.44 | 75.18 |
| KRH42369 | Soybean | nucleus | 76.68 | 75.06 |
| KRH58491 | Soybean | nucleus | 76.44 | 74.82 |
| CDY62688 | Canola | nucleus | 75.72 | 73.94 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 75.24 | 73.13 |
| Os03t0640100-01 | Rice | cytosol | 75.24 | 73.13 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 75.0 | 72.9 |
| TraesCSU01G072700.1 | Wheat | nucleus | 74.76 | 72.66 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 38.94 | 72.65 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 74.76 | 72.16 |
| Zm00001d033247_P001 | Maize | nucleus | 74.52 | 71.93 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 19.95 | 70.94 |
| Zm00001d013702_P001 | Maize | nucleus | 72.12 | 69.61 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 67.31 | 66.67 |
| CDX88663 | Canola | nucleus | 80.53 | 52.67 |
| CDY58569 | Canola | cytosol | 80.53 | 52.67 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 75.0 | 51.32 |
| CDY47479 | Canola | cytosol | 49.76 | 50.0 |
| CDY26787 | Canola | cytosol | 49.76 | 50.0 |
| CDY70131 | Canola | cytosol | 22.6 | 44.98 |
| CDY43523 | Canola | nucleus | 31.49 | 27.58 |
| CDX81933 | Canola | nucleus | 31.73 | 27.27 |
| CDY29763 | Canola | endoplasmic reticulum | 21.63 | 26.71 |
| CDY06779 | Canola | nucleus | 31.01 | 26.6 |
| CDY21661 | Canola | nucleus | 31.97 | 26.28 |
| CDY48711 | Canola | nucleus | 31.25 | 25.84 |
| CDY03358 | Canola | nucleus | 31.25 | 25.79 |
| CDY70287 | Canola | nucleus | 11.06 | 25.14 |
| CDY35867 | Canola | cytosol | 16.59 | 24.3 |
| CDX82696 | Canola | nucleus | 24.28 | 22.95 |
| CDX90175 | Canola | cytosol | 16.59 | 21.77 |
| CDX99799 | Canola | cytosol | 16.59 | 21.77 |
| CDY43325 | Canola | cytosol | 16.35 | 21.45 |
| CDY50786 | Canola | cytosol | 16.35 | 21.45 |
| CDY48712 | Canola | plastid | 24.28 | 21.44 |
| CDY03357 | Canola | plastid | 24.28 | 21.35 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 17.07 | 20.88 |
| CDY21659 | Canola | nucleus | 23.56 | 20.72 |
| CDX81935 | Canola | nucleus | 23.56 | 20.63 |
| CDX82701 | Canola | nucleus | 18.03 | 19.33 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | GO:A0A078H271 | UniProt:A0A078H271 | EnsemblPlants:CDY32715 |
| ProteinID:CDY32715 | ProteinID:CDY32715.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00052765001 | InterPro:Histone-bd_RBBP4_N |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0004EED2D5 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
BnaA02g07770DBnaA02g07770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H271]
Coordinates
chrLK032298:-:312375..314755
Molecular Weight (calculated)
47210.2 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.533
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MARDDEETQE EIKERLINEE YKTWKRNTPF LYDLVISHLL EWPSLTVEWL PDREEPSGKN YSVQKMILGT HTHVNEANYL MLAQVQLPLA DAEYNDERAK
101: FGSATGKVQV IKKINHEGEM NRARYMPQNP FMIATKTVRG EVYVFDYSKH PSKPALDGAC NPDLRLRGHS SEGYGLSWST LKQGHLLSGA NDAQICLWDI
201: NASPKNKTLD AHQIFKAHEG NVEDVAWHLR HEYLFGSVGE DQYFFIWDLR SPSASKPVQS VAAHSREVNC LAFNPLNEWI VATGSTDKTV KVFDLRRLSS
301: ALHSLDGHIE EVFQVGWSPK NESIVASSCL GRRIMVWDIN KIDEEQTAEA AEDGPPELLF THGGHTARIS DFSWNPCDDW VISSVCEDNI LQIWQMAETI
401: YHGEDDAPGE EPLRGS
101: FGSATGKVQV IKKINHEGEM NRARYMPQNP FMIATKTVRG EVYVFDYSKH PSKPALDGAC NPDLRLRGHS SEGYGLSWST LKQGHLLSGA NDAQICLWDI
201: NASPKNKTLD AHQIFKAHEG NVEDVAWHLR HEYLFGSVGE DQYFFIWDLR SPSASKPVQS VAAHSREVNC LAFNPLNEWI VATGSTDKTV KVFDLRRLSS
301: ALHSLDGHIE EVFQVGWSPK NESIVASSCL GRRIMVWDIN KIDEEQTAEA AEDGPPELLF THGGHTARIS DFSWNPCDDW VISSVCEDNI LQIWQMAETI
401: YHGEDDAPGE EPLRGS
001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
Arabidopsis Description
MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.