CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75032
CDX84179
CDX84180
CDX88663
CDX89960
CDY02805
CDY15252
CDY27567
CDY31712
CDY32472
CDY32715
CDY33160
CDY37467
CDY43875
CDY53612
CDY58569
CDY62688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	CDX89960	AT1G02580.1	10962025
AT1G02580.1	CDY15252	AT1G02580.1	10962025
AT1G02580.1	CDY32472	AT1G02580.1	10962025
AT1G02580.1	CDY37467	AT1G02580.1	10962025
AT1G02580.1	CDX89960	AT1G02580.1	11148284
AT1G02580.1	CDY15252	AT1G02580.1	11148284
AT1G02580.1	CDY32472	AT1G02580.1	11148284
AT1G02580.1	CDY37467	AT1G02580.1	11148284
AT1G02580.1	CDX75032	AT2G35670.1	15456723
AT1G02580.1	CDX84179	AT2G35670.1	15456723
AT1G02580.1	CDX84180	AT2G35670.1	15456723
AT1G02580.1	CDY31712	AT2G35670.1	15456723
AT1G02580.1	CDY33160	AT2G35670.1	15456723
AT1G02580.1	CDX75032	AT2G35670.1	16924116
AT1G02580.1	CDX84179	AT2G35670.1	16924116
AT1G02580.1	CDX84180	AT2G35670.1	16924116
AT1G02580.1	CDY31712	AT2G35670.1	16924116
AT1G02580.1	CDY33160	AT2G35670.1	16924116
AT1G02580.1	CDY27567	AT3G20740.1	10962025
AT1G02580.1	CDY53612	AT3G20740.1	10962025
AT1G02580.1	CDY27567	AT3G20740.1	11114524
AT1G02580.1	CDY53612	AT3G20740.1	11114524
AT1G02580.1	CDY27567	AT3G20740.1	11148284
AT1G02580.1	CDY53612	AT3G20740.1	11148284
AT1G02580.1	CDY27567	AT3G20740.1	15456723
AT1G02580.1	CDY53612	AT3G20740.1	15456723
AT1G02580.1	CDY27567	AT3G20740.1	15469499
AT1G02580.1	CDY53612	AT3G20740.1	15469499
AT1G02580.1	CDY27567	AT3G20740.1	18812497
AT1G02580.1	CDY53612	AT3G20740.1	18812497
AT1G02580.1	CDX88663	AT5G58230.1	12970192
AT1G02580.1	CDY02805	AT5G58230.1	12970192
AT1G02580.1	CDY32715	AT5G58230.1	12970192
AT1G02580.1	CDY43875	AT5G58230.1	12970192
AT1G02580.1	CDY58569	AT5G58230.1	12970192
AT1G02580.1	CDY62688	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033334.1-P	Field mustard	nucleus	99.84	99.84
CDY15252	Canola	nucleus	68.03	97.97
CDY37467	Canola	nucleus	64.42	61.9
CDY32472	Canola	nucleus	61.91	61.43
AT1G02580.1	Thale cress	nucleus	59.56	55.15
KRG96530	Soybean	cytosol, nucleus	36.21	34.07
KRH28654	Soybean	nucleus	35.42	32.29
KRH68267	Soybean	nucleus	36.83	31.59
CDY22021	Canola	nucleus	42.16	31.57
CDY07102	Canola	nucleus	42.16	31.43
CDY17381	Canola	nucleus	39.97	30.32
KRH68336	Soybean	nucleus	37.46	29.36
KRH31789	Soybean	nucleus	39.97	29.31
KRH69214	Soybean	nucleus	39.81	29.26
GSMUA_Achr1P24850_001	Banana	nucleus	38.56	27.92
TraesCS4B01G181400.3	Wheat	nucleus, plastid	37.15	26.63
TraesCS4D01G184600.3	Wheat	nucleus, plastid	37.15	26.63
KXG40039	Sorghum	nucleus	37.46	26.59
Os03t0307800-01	Rice	nucleus	36.52	26.03
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	37.15	25.99
CDY38942	Canola	nucleus, plastid	36.21	25.47
CDX89569	Canola	nucleus, plastid	36.05	25.27
Zm00001d047636_P002	Maize	nucleus	35.11	25.23
TraesCS4A01G121300.4	Wheat	mitochondrion	37.15	24.48
Zm00001d028890_P002	Maize	nucleus	34.17	19.62
CDX67669	Canola	cytosol, nucleus, plastid	7.37	18.29
CDX67818	Canola	nucleus	8.15	16.2
CDX98400	Canola	nucleus	8.15	16.2
CDY41194	Canola	nucleus	8.15	14.99
CDX71856	Canola	nucleus	8.31	14.72
CDY36467	Canola	nucleus	11.29	14.55
CDX79778	Canola	cytosol	8.31	14.52
CDY23260	Canola	nucleus	10.81	13.97
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.15	13.79
CDX83438	Canola	cytosol	7.84	13.55
CDX95590	Canola	nucleus	7.68	13.42
CDX95185	Canola	endoplasmic reticulum, nucleus	9.72	12.68
CDX88310	Canola	nucleus	8.93	12.36
CDX87571	Canola	nucleus	8.93	12.36
CDY29869	Canola	mitochondrion	14.11	9.4
CDX92851	Canola	mitochondrion	13.01	9.06
CDY35655	Canola	nucleus	13.48	8.83
CDY14381	Canola	nucleus	13.32	8.73
CDX67860	Canola	nucleus	12.85	8.51
CDY25072	Canola	nucleus	12.85	8.39
CDY19078	Canola	nucleus	11.6	7.18
CDY15398	Canola	nucleus	11.6	7.16
CDY06182	Canola	nucleus	11.91	7.16
CDY10007	Canola	nucleus	11.44	6.56
CDY52297	Canola	nucleus	12.85	6.37
CDX87527	Canola	nucleus	12.7	4.89
CDX88357	Canola	nucleus	12.23	4.71
CDX95184	Canola	cytosol	6.27	3.55

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	EnsemblPlants:CDX89960	ProteinID:CDX89960
ProteinID:CDX89960.1	InterPro:CXC_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031519	EnsemblPlantsGene:GSBRNA2T00150448001
InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	PFAM:PF00856	PFscan:PS50280
PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317	SMART:SM01114
SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0004EDDB1B	SEG:seg	:	:

Description

BnaA10g01220D

Coordinates

chrLK031861:-:952397..959591

Molecular Weight (calculated)

73392.5 Da

IEP (calculated)

8.397

GRAVY (calculated)

-0.710

Length

638 amino acids

Sequence
(BLAST)

001: MFIASKFSDP KRRKDGKELL PDLNEVKAQI GKERFDHINN KFKSRVLPSV TAHAAHNHLL PLTRHNGKRN NETAIKMLSS RMEPLVHHFN ENDDISYEEV
101: TFKIPDEEVT KLISVKQLPR SLTWVFTDSN QLMAASESVI GKKQFHYVDG EAVELSPDKK KYEDAKKQKM EFSKEVDRFI WLIGQKYSLD DLVVQRTLSK
201: FLELKVSDIL ERYNKLKNDG DIGEISDKSK FISVPATADK HFCRRCLIFD CHLHEEYQPL PRENKSNLFE REDAEKQCSK HCYLKPRSFI EADHVVDNDN
301: SISNDKGNNV VTEMSHTYNE WSPVDKNLYL QGVEIFGRNS CLITRNLLSG HKTCLEVYNY MREQDQTPEI DNQVNKEISR KKTKFARKRA KLKKHVCYPP
401: AIKNSAKELN KEYKQYTPCT CEPVCGDQCP CLTSGNVCEK YCGCLKTCKN RFGGCNCAKG QCSNRQCPCF SISRECDPDI CRSCSLSCGD GSLGEASQPI
501: QCMNMRFLLK KHKKILLAMS DVHGWGAFTR HSLKKNEFLG EYTGELVSYE EAEERGRAER KNGFSYLFTL NDKICIDARR KGNKLKFLNH SSKPNCYAKL
601: MVVRGDHRIG LFADKNIGEG EELFFHYCYG PGHADWSQ

Best Arabidopsis Sequence Match ( AT1G02580.1 )
(BLAST)

001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR

Arabidopsis Description

MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.