CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	95.34	92.31
AT2G44150.1	Thale cress	nucleus	79.45	79.89
CDX83438	Canola	cytosol	74.52	73.71
CDX95590	Canola	nucleus	72.6	72.6
PGSC0003DMT400010951	Potato	cytosol	40.0	63.48
CDY41194	Canola	nucleus	57.26	60.23
GSMUA_Achr2P12180_001	Banana	nucleus	59.18	57.91
CDX71856	Canola	nucleus	56.71	57.5
CDX98400	Canola	nucleus	48.49	55.14
CDX67818	Canola	nucleus	47.67	54.21
Solyc12g100290.1.1	Tomato	nucleus	61.92	52.07
VIT_16s0039g00740.t01	Wine grape	mitochondrion	64.66	51.98
TraesCS7A01G453700.1	Wheat	nucleus	47.95	51.78
TraesCS7D01G443000.1	Wheat	nucleus	47.95	51.78
KRH75137	Soybean	cytosol	17.81	51.18
TraesCS7B01G354300.1	Wheat	nucleus	47.67	51.18
Os09t0307800-01	Rice	cytosol	47.4	50.88
TraesCS5D01G184500.1	Wheat	nucleus	48.22	49.58
Zm00001d005563_P006	Maize	nucleus	45.21	48.67
TraesCS5A01G179900.1	Wheat	nucleus	48.22	48.62
TraesCS5B01G177800.2	Wheat	nucleus	47.95	48.34
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	59.45	48.12
Zm00001d020038_P001	Maize	nucleus	44.93	46.07
HORVU5Hr1G054880.2	Barley	mitochondrion	46.85	44.65
OQU89246	Sorghum	nucleus	45.21	44.24
HORVU7Hr1G103420.7	Barley	nucleus	47.67	42.13
CDX67669	Canola	cytosol, nucleus, plastid	17.81	25.29
CDY36467	Canola	nucleus	32.05	23.64
CDY23260	Canola	nucleus	31.78	23.48
CDX87571	Canola	nucleus	25.48	20.17
CDX88310	Canola	nucleus	25.48	20.17
CDY15252	Canola	nucleus	14.79	12.19
CDX95185	Canola	endoplasmic reticulum, nucleus	15.89	11.86
CDX89960	Canola	nucleus	14.52	8.31
CDY32472	Canola	nucleus	14.52	8.24
CDY37467	Canola	nucleus	14.52	7.98
CDX92851	Canola	mitochondrion	18.63	7.42
CDY22021	Canola	nucleus	16.99	7.28
CDY07102	Canola	nucleus	16.99	7.24
CDY29869	Canola	mitochondrion	18.9	7.21
CDY38942	Canola	nucleus, plastid	17.26	6.95
CDX89569	Canola	nucleus, plastid	16.99	6.81
CDX67860	Canola	nucleus	17.53	6.64
CDY25072	Canola	nucleus	17.53	6.55
CDY19078	Canola	nucleus	17.81	6.31
CDY15398	Canola	nucleus	17.81	6.29
CDY14381	Canola	nucleus	16.44	6.16
CDY35655	Canola	nucleus	16.44	6.16
CDX88357	Canola	nucleus	27.4	6.04
CDX87527	Canola	nucleus	27.4	6.04
CDY06182	Canola	nucleus	17.53	6.03
CDY17381	Canola	nucleus	13.42	5.83
CDY10007	Canola	nucleus	16.99	5.57
CDY52297	Canola	nucleus	16.71	4.74
CDX95184	Canola	cytosol	3.56	1.15

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:A0A078CXB4	InterPro:AWS_dom	EnsemblPlants:CDX79778
ProteinID:CDX79778	ProteinID:CDX79778.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00132606001	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI0004EF2358	SEG:seg	:	:	:	:

Description

BnaA05g03780D

Coordinates

chrLK031819:-:133901..136098

Molecular Weight (calculated)

41810.9 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.519

Length

365 amino acids

Sequence
(BLAST)

001: MFFFFQISDR NHIGQVFNKL LKQIGEAEEE FELPDWLNRG KPTPYIFIKR NTYLTKKIKK RVEDDGIFCS CSLSPDSSSS SVCGSNCHCG MLFSSCSSSC
101: KCGTECNNKP FQHRYVKKLK LIQTDKCGSG IVAEEEIQQG EFIIEYVGEV IDDKTCEERL WKMKHRGETN FYLCEINRDM VIDATHKGNK SRYINHSCCP
201: NTQMQKWIID GEIRIGIFAT CDIKKGEHLT YDYQFVQFGA DQDCHCGAIG CRRKLGVKPK PKLPSDEALK VVVSEVTQTL PEVHQNGAIH EHDEGKPWNK
301: LEQGQPCPHN CIGVVLRLSR TRSDRCFCII RNFDAVTRKH AVMFEDGATE FIDMSKEEDW EILSD

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.