CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75032
CDX84179
CDX84180
CDX88663
CDX89960
CDY02805
CDY15252
CDY27567
CDY31712
CDY32472
CDY32715
CDY33160
CDY37467
CDY43875
CDY53612
CDY58569
CDY62688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	CDX89960	AT1G02580.1	10962025
AT1G02580.1	CDY15252	AT1G02580.1	10962025
AT1G02580.1	CDY32472	AT1G02580.1	10962025
AT1G02580.1	CDY37467	AT1G02580.1	10962025
AT1G02580.1	CDX89960	AT1G02580.1	11148284
AT1G02580.1	CDY15252	AT1G02580.1	11148284
AT1G02580.1	CDY32472	AT1G02580.1	11148284
AT1G02580.1	CDY37467	AT1G02580.1	11148284
AT1G02580.1	CDX75032	AT2G35670.1	15456723
AT1G02580.1	CDX84179	AT2G35670.1	15456723
AT1G02580.1	CDX84180	AT2G35670.1	15456723
AT1G02580.1	CDY31712	AT2G35670.1	15456723
AT1G02580.1	CDY33160	AT2G35670.1	15456723
AT1G02580.1	CDX75032	AT2G35670.1	16924116
AT1G02580.1	CDX84179	AT2G35670.1	16924116
AT1G02580.1	CDX84180	AT2G35670.1	16924116
AT1G02580.1	CDY31712	AT2G35670.1	16924116
AT1G02580.1	CDY33160	AT2G35670.1	16924116
AT1G02580.1	CDY27567	AT3G20740.1	10962025
AT1G02580.1	CDY53612	AT3G20740.1	10962025
AT1G02580.1	CDY27567	AT3G20740.1	11114524
AT1G02580.1	CDY53612	AT3G20740.1	11114524
AT1G02580.1	CDY27567	AT3G20740.1	11148284
AT1G02580.1	CDY53612	AT3G20740.1	11148284
AT1G02580.1	CDY27567	AT3G20740.1	15456723
AT1G02580.1	CDY53612	AT3G20740.1	15456723
AT1G02580.1	CDY27567	AT3G20740.1	15469499
AT1G02580.1	CDY53612	AT3G20740.1	15469499
AT1G02580.1	CDY27567	AT3G20740.1	18812497
AT1G02580.1	CDY53612	AT3G20740.1	18812497
AT1G02580.1	CDX88663	AT5G58230.1	12970192
AT1G02580.1	CDY02805	AT5G58230.1	12970192
AT1G02580.1	CDY32715	AT5G58230.1	12970192
AT1G02580.1	CDY43875	AT5G58230.1	12970192
AT1G02580.1	CDY58569	AT5G58230.1	12970192
AT1G02580.1	CDY62688	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033334.1-P	Field mustard	nucleus	97.97	68.03
CDX89960	Canola	nucleus	97.97	68.03
CDY37467	Canola	nucleus	69.75	46.54
CDY32472	Canola	nucleus	66.14	45.57
AT1G02580.1	Thale cress	nucleus	65.24	41.94
KRG96530	Soybean	cytosol, nucleus	44.7	29.2
KRH28654	Soybean	nucleus	44.7	28.29
KRH68267	Soybean	nucleus	44.92	26.75
CDY22021	Canola	nucleus	50.11	26.06
CDY07102	Canola	nucleus	50.34	26.05
KRH68336	Soybean	nucleus	46.28	25.18
CDY17381	Canola	nucleus	46.95	24.73
KRH31789	Soybean	nucleus	46.95	23.91
KRH69214	Soybean	nucleus	46.73	23.85
GSMUA_Achr1P24850_001	Banana	nucleus	47.18	23.72
TraesCS4B01G181400.3	Wheat	nucleus, plastid	45.37	22.58
TraesCS4D01G184600.3	Wheat	nucleus, plastid	45.37	22.58
KXG40039	Sorghum	nucleus	45.37	22.36
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	45.15	21.93
Os03t0307800-01	Rice	nucleus	44.24	21.9
CDY38942	Canola	nucleus, plastid	43.34	21.17
CDX89569	Canola	nucleus, plastid	43.12	20.99
TraesCS4A01G121300.4	Wheat	mitochondrion	45.15	20.66
Zm00001d047636_P002	Maize	nucleus	41.31	20.61
CDX67669	Canola	cytosol, nucleus, plastid	10.61	18.29
CDX67818	Canola	nucleus	11.74	16.2
CDX98400	Canola	nucleus	11.74	16.2
Zm00001d028890_P002	Maize	nucleus	40.41	16.11
CDY41194	Canola	nucleus	11.74	14.99
CDX79778	Canola	cytosol	12.19	14.79
CDX71856	Canola	nucleus	11.96	14.72
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.96	14.06
CDX83438	Canola	cytosol	11.51	13.82
CDX95590	Canola	nucleus	11.29	13.7
CDY36467	Canola	nucleus	14.22	12.73
CDX95185	Canola	endoplasmic reticulum, nucleus	13.77	12.47
CDX88310	Canola	nucleus	12.87	12.36
CDX87571	Canola	nucleus	12.87	12.36
CDY23260	Canola	nucleus	13.54	12.15
CDY29869	Canola	mitochondrion	17.61	8.15
CDX92851	Canola	mitochondrion	16.7	8.08
CDX67860	Canola	nucleus	16.93	7.78
CDY25072	Canola	nucleus	16.93	7.68
CDY35655	Canola	nucleus	16.48	7.49
CDY14381	Canola	nucleus	16.48	7.49
CDY19078	Canola	nucleus	14.45	6.21
CDY15398	Canola	nucleus	14.45	6.19
CDY06182	Canola	nucleus	14.45	6.03
CDY10007	Canola	nucleus	14.0	5.57
CDY52297	Canola	nucleus	16.03	5.51
CDX87527	Canola	nucleus	15.58	4.16
CDX88357	Canola	nucleus	15.35	4.1
CDX95184	Canola	cytosol	6.55	2.57

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	UniProt:A0A078FQV7	EnsemblPlants:CDY15252
ProteinID:CDY15252	ProteinID:CDY15252.1	InterPro:CXC_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031519
EnsemblPlantsGene:GSBRNA2T00085449001	InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	PFAM:PF00856
PFscan:PS50280	PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SANT/Myb	InterPro:SET_dom
SMART:SM00317	SMART:SM01114	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0004EEC722	SEG:seg

Description

BnaC05g01310DBnaC05g01310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQV7]

Coordinates

chrLK032052:+:686098..689613

Molecular Weight (calculated)

50570.3 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.671

Length

443 amino acids

Sequence
(BLAST)

001: MILTLSKFLE LKVSDILERY NKLKNDGDIG EISDKSKFIS VPATADKHFC RRCLIFDCHL HEEYQPLPRE NKSNLFERED AEKQCSKHCY LKPRSFIEAD
101: HVVDNDNSIS NDKGNNVVTG TNTETWSPVD KNLYLQGVEI FGRNSCLITR NLLSGHKTCL EVYNYMREQD QTPEIDNQVN KEISRKKTKF ARKRAKLKKH
201: VCYPPAIKNS AKELNKEYKQ YTPCTCEPVC GDQCPCLTSG NVCEKYCGCL KTCKNRFGGC NCAKGQCSNR QCPCFSISRE CDPDICRSCS LSCGDGSLGE
301: ASQPIQCMNM KFLLKKHKKI LLAMSDVHGW GAFTRHSLKK NEFLGEYTGE LVSYEEAEER GRAERKNGFS YLFTLNDKIC IDARRKGNKL KFLNHSSKPN
401: CYAKLMVVRG DHRIGLFADK NIGEGEELFF HYCYGPGHAD WSQ

Best Arabidopsis Sequence Match ( AT1G02580.1 )
(BLAST)

001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR

Arabidopsis Description

MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.