CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96530
KRH22237
KRH27099
KRH28171
KRH28654
KRH31789
KRH31935
KRH42369
KRH58491
KRH68267
KRH68336
KRH69214
KRH71526
KRH77315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	KRG96530	AT1G02580.1	10962025
AT1G02580.1	KRH28654	AT1G02580.1	10962025
AT1G02580.1	KRH31789	AT1G02580.1	10962025
AT1G02580.1	KRH68267	AT1G02580.1	10962025
AT1G02580.1	KRH68336	AT1G02580.1	10962025
AT1G02580.1	KRH69214	AT1G02580.1	10962025
AT1G02580.1	KRG96530	AT1G02580.1	11148284
AT1G02580.1	KRH28654	AT1G02580.1	11148284
AT1G02580.1	KRH31789	AT1G02580.1	11148284
AT1G02580.1	KRH68267	AT1G02580.1	11148284
AT1G02580.1	KRH68336	AT1G02580.1	11148284
AT1G02580.1	KRH69214	AT1G02580.1	11148284
AT1G02580.1	KRH28171	AT2G35670.1	15456723
AT1G02580.1	KRH77315	AT2G35670.1	15456723
AT1G02580.1	KRH28171	AT2G35670.1	16924116
AT1G02580.1	KRH77315	AT2G35670.1	16924116
AT1G02580.1	KRH22237	AT3G20740.1	10962025
AT1G02580.1	KRH27099	AT3G20740.1	10962025
AT1G02580.1	KRH31935	AT3G20740.1	10962025
AT1G02580.1	KRH71526	AT3G20740.1	10962025
AT1G02580.1	KRH22237	AT3G20740.1	11114524
AT1G02580.1	KRH27099	AT3G20740.1	11114524
AT1G02580.1	KRH31935	AT3G20740.1	11114524
AT1G02580.1	KRH71526	AT3G20740.1	11114524
AT1G02580.1	KRH22237	AT3G20740.1	11148284
AT1G02580.1	KRH27099	AT3G20740.1	11148284
AT1G02580.1	KRH31935	AT3G20740.1	11148284
AT1G02580.1	KRH71526	AT3G20740.1	11148284
AT1G02580.1	KRH22237	AT3G20740.1	15456723
AT1G02580.1	KRH27099	AT3G20740.1	15456723
AT1G02580.1	KRH31935	AT3G20740.1	15456723
AT1G02580.1	KRH71526	AT3G20740.1	15456723
AT1G02580.1	KRH22237	AT3G20740.1	15469499
AT1G02580.1	KRH27099	AT3G20740.1	15469499
AT1G02580.1	KRH31935	AT3G20740.1	15469499
AT1G02580.1	KRH71526	AT3G20740.1	15469499
AT1G02580.1	KRH22237	AT3G20740.1	18812497
AT1G02580.1	KRH27099	AT3G20740.1	18812497
AT1G02580.1	KRH31935	AT3G20740.1	18812497
AT1G02580.1	KRH71526	AT3G20740.1	18812497
AT1G02580.1	KRH42369	AT5G58230.1	12970192
AT1G02580.1	KRH58491	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96530	Soybean	cytosol, nucleus	60.14	62.09
KRH68336	Soybean	nucleus	71.43	61.43
KRH68267	Soybean	nucleus	62.57	58.87
CDY15252	Canola	nucleus	28.29	44.7
KRH69214	Soybean	nucleus	54.14	43.66
KRH31789	Soybean	nucleus	53.86	43.33
GSMUA_Achr1P24850_001	Banana	nucleus	46.0	36.55
KXG40039	Sorghum	nucleus	45.86	35.71
CDY32472	Canola	nucleus	32.57	35.46
Bra033334.1-P	Field mustard	nucleus	32.29	35.42
CDX89960	Canola	nucleus	32.29	35.42
AT1G02580.1	Thale cress	nucleus	34.71	35.27
Os03t0307800-01	Rice	nucleus	44.86	35.08
TraesCS4B01G181400.3	Wheat	nucleus, plastid	44.43	34.94
TraesCS4D01G184600.3	Wheat	nucleus, plastid	44.43	34.94
CDY37467	Canola	nucleus	33.0	34.79
Bra032592.1-P	Field mustard	nucleus	31.43	34.43
KRH77020	Soybean	nucleus	41.71	33.91
KRH28444	Soybean	nucleus	41.71	33.91
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	44.14	33.88
TraesCS4A01G121300.4	Wheat	mitochondrion	44.43	32.13
Zm00001d047636_P002	Maize	nucleus	38.71	30.52
Zm00001d028890_P002	Maize	nucleus	41.29	26.01
KRH75137	Soybean	cytosol	3.0	16.54
KRH38763	Soybean	cytosol	7.71	15.47
KRH09264	Soybean	nucleus	7.71	15.47
KRH54981	Soybean	plastid	9.86	13.12
KRH35109	Soybean	nucleus	8.71	12.71
KRG91687	Soybean	nucleus	9.0	12.7
KRG94193	Soybean	cytosol, nucleus	8.43	11.11
KRH47912	Soybean	nucleus	12.86	9.1
KRH64461	Soybean	nucleus	13.57	8.96
KRH68208	Soybean	nucleus	12.43	8.85
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	12.43	8.82
KRH06474	Soybean	nucleus	12.43	8.81
KRH53486	Soybean	nucleus	13.29	8.72
KRH45215	Soybean	nucleus	13.29	8.55
KRH01524	Soybean	nucleus	13.14	8.46
KRH12193	Soybean	nucleus	11.29	6.44
KRH37214	Soybean	nucleus	11.29	6.44
KRG94170	Soybean	nucleus	3.86	5.67
KRH15817	Soybean	nucleus	13.14	4.58
KRH05241	Soybean	nucleus	13.0	4.48
KRH53306	Soybean	nucleus	11.71	4.02
KRH64610	Soybean	nucleus	11.57	3.89

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	UniProt:A0A0R0HD21	EMBL:ACUP02006760
InterPro:CXC_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G067000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0031519	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_EZ
InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	EnsemblPlants:KRH28654	ProteinID:KRH28654	ProteinID:KRH28654.1
PFAM:PF00856	PFscan:PS50280	PFscan:PS51576	PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237
InterPro:SET_dom	SMART:SM00317	SMART:SM01114	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0006ED715D

Description

hypothetical protein

Coordinates

chr11:-:5021150..5028011

Molecular Weight (calculated)

79425.5 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.561

Length

700 amino acids

Sequence
(BLAST)

001: MSIIFERGSL ETEKNVNMLS SRIHNPLCKL SGFPKGIVEK NQINNVDLSP TKSIRIPHTD KLPQYTSWVY VARNERMVDD QSVIGKYQMY HDKNKGEMVI
101: CSDNEEEIVD PEDVKHEFTE VEDKFLRMTL EEYGCTEEVL NVVKKFVKTT NSEIQERYEK LKEKNMEILD QHCEDCHCRG CENHLGLCLE KSLSVTLETF
201: NNLLCRQCLI FDCPMHGINK PLVYHSENQP VWLEPEGDKK PCSDQCYLML KDARILSKNS TQWSFQDKVI TTMEEDSILP QKLTISGSSG HGECDKRVVD
301: GQKDLINGIK LNQISISREV QANGMSSDSY WRPLEMDLYL KGVKMFGKNS CLIAITLLPG LKTCLEVARY MFGGGELMTN GFIPSSIMEK NEKINAGCTD
401: QEMSSRSRPQ RKKGKPKKFN YSRKSAGLPP RWRKIAYGQN LCNKQYTPCG CHGICGKECS CLVNGTCCEK YCGCSKHCSN RFRGCRCTKS QCKSRSCPCF
501: AANRECDPDV CQNCWVSCGD DSLGRLPRHE DAKCGNMNLL LGQKERILLA KSDVIGWGAF AKNPISKNVC LGEYTGELIP PKEAEKRGKL YDRINTSFLF
601: NLNDQWVIDA FRMGDKLKFA NHSSKPNCYA KVMLVGGDHR VGIFARENIK AGDEIFYDYG YDLDSAPLWA LPPNEAAKKD KLVVSLSRTK KKEKKSVSFQ

Best Arabidopsis Sequence Match ( AT1G02580.1 )
(BLAST)

001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR

Arabidopsis Description

MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.