CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38763	Soybean	cytosol	96.56	96.56
GSMUA_Achr2P12180_001	Banana	nucleus	65.04	60.86
VIT_16s0039g00740.t01	Wine grape	mitochondrion	76.5	58.81
Os09t0307800-01	Rice	cytosol	51.0	52.35
KRH75137	Soybean	cytosol	18.91	51.97
TraesCS7A01G453700.1	Wheat	nucleus	49.28	50.89
TraesCS7B01G354300.1	Wheat	nucleus	49.57	50.88
TraesCS7D01G443000.1	Wheat	nucleus	49.0	50.59
TraesCS5D01G184500.1	Wheat	nucleus	50.72	49.86
TraesCS5A01G179900.1	Wheat	nucleus	50.43	48.62
TraesCS5B01G177800.2	Wheat	nucleus	49.86	48.07
Zm00001d005563_P006	Maize	nucleus	46.13	47.49
HORVU5Hr1G054880.2	Barley	mitochondrion	49.86	45.43
Zm00001d020038_P001	Maize	nucleus	45.56	44.66
OQU89246	Sorghum	nucleus	45.85	42.9
HORVU7Hr1G103420.7	Barley	nucleus	49.86	42.13
KRH54981	Soybean	plastid	36.1	23.95
KRH35109	Soybean	nucleus	27.22	19.79
KRG91687	Soybean	nucleus	27.22	19.15
KRG94193	Soybean	cytosol, nucleus	15.76	10.36
KRH28654	Soybean	nucleus	15.47	7.71
KRG96530	Soybean	cytosol, nucleus	14.9	7.67
KRH68267	Soybean	nucleus	16.33	7.66
KRH28444	Soybean	nucleus	16.33	6.62
KRH77020	Soybean	nucleus	16.33	6.62
KRH68336	Soybean	nucleus	15.19	6.51
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	18.34	6.49
KRH69214	Soybean	nucleus	16.05	6.45
KRH31789	Soybean	nucleus	16.05	6.44
KRH68208	Soybean	nucleus	18.05	6.41
KRH06474	Soybean	nucleus	18.05	6.38
KRH47912	Soybean	nucleus	18.05	6.37
KRH01524	Soybean	nucleus	18.91	6.07
KRH45215	Soybean	nucleus	18.91	6.07
KRH53486	Soybean	nucleus	17.77	5.81
KRH64461	Soybean	nucleus	17.48	5.75
KRH12193	Soybean	nucleus	19.2	5.46
KRH37214	Soybean	nucleus	18.91	5.38
KRH53306	Soybean	nucleus	30.95	5.29
KRH64610	Soybean	nucleus	30.66	5.13
KRH05241	Soybean	nucleus	18.62	3.2
KRH15817	Soybean	nucleus	18.34	3.19
KRG94170	Soybean	nucleus	0.29	0.21

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100794521	MapMan:12.3.3.4	Gene3D:2.170.270.10	EMBL:ACUP02010275	InterPro:AWS_dom
EnsemblPlantsGene:GLYMA_16G207200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	UniProt:I1MQB2	InterPro:IPR001214	InterPro:IPR003616
InterPro:IPR006560	InterPro:IPR025787	EnsemblPlants:KRH09264	ProteinID:KRH09264	ProteinID:KRH09264.1	ProteinID:KRH09265.1
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI000233B074	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:36705861..36716997

Molecular Weight (calculated)

39662.7 Da

IEP (calculated)

7.985

GRAVY (calculated)

-0.485

Length

349 amino acids

Sequence
(BLAST)

001: MPAMKKNPEL TCIGSVFNML GKELGEPVDF ELPDSFNKSK PMQYTYIKRN IYLTKKVKRS RFDDDGIFCS CTPSPGSTSV CGRDCHCGML LSSCSSGCKC
101: GSSCLNKPFQ NRPVKKMKLV KTEKCGSGIV ADEDIKLGEF VIEYVGEVID DKTCEERLWN MKHSGETNFY LCEINRDMVI DATYKGNKSR YINHSCCPNT
201: EMQKWIIDGE TRIGIFATRD IQKGEHLTYD YQFVQFGADQ DCHCGAAECR RKLGVRPTKS KLSSDAALKL VAYQVYQNGG LQIGSSRVVD QPKCLHNCIG
301: EVIRIKHLEN ERFGIIKRFD KYSRKHSIMF EDGCVEIYDM SKEDFELVR

Best Arabidopsis Sequence Match ( AT3G59960.1 )
(BLAST)

001: MSSSKKGSDR NQIRKSLRKL KKQIGELEKL ESPDRLNNVK PIFIKRNIYL KKKLKKKVKD HGIFCSCSLD PGSSTLCGSD CNCGILLSSC SSSCKCSSEC
101: TNKPFQQRHI KKMKLVQTEK CGYGIVADED INSGEFIIEY VGEVIDDKIC EERLWKLNHK VETNFYLCQI NWNMVIDATH KGNKSRYINH SCSPNTEMQK
201: WIIDGETRIG IFATRFINKG EQLTYDYQFV QFGADQDCYC GAVCCRKKLG AKPCKTKNTT LEEAVKPVAC KVTWKTPKGK TRGRRIAGQA WNNHSQRKIC
301: CRDCIGAVIW LARPMNQKCF GIITQYDEF

Arabidopsis Description

ASHH4histone-lysine N-methyltransferase ASHH4 [Source:TAIR;Acc:AT3G59960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.