CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01524	Soybean	nucleus	94.58	94.58
VIT_05s0124g00250.t01	Wine grape	nucleus	61.12	61.35
Bra021721.1-P	Field mustard	nucleus	51.38	58.11
AT2G31650.1	Thale cress	nucleus	55.97	57.34
GSMUA_Achr1P18360_001	Banana	nucleus	53.86	57.06
AT1G05830.3	Thale cress	nucleus	56.71	56.97
CDY19078	Canola	nucleus	53.49	56.5
CDY15398	Canola	nucleus	53.58	56.38
CDY06182	Canola	nucleus	54.87	56.21
Os09t0134500-02	Rice	nucleus	50.46	53.72
CDY10007	Canola	nucleus	54.23	53.01
EER96448	Sorghum	nucleus	49.08	52.35
Zm00001d019907_P003	Maize	nucleus	48.62	50.33
TraesCS5B01G163000.1	Wheat	nucleus, plastid	50.09	50.18
TraesCS5A01G165200.1	Wheat	plastid	49.82	49.91
TraesCS5D01G170100.5	Wheat	nucleus, plastid	49.91	48.05
HORVU5Hr1G051100.8	Barley	nucleus	50.0	47.35
KRG94193	Soybean	cytosol, nucleus	13.6	27.87
KRH47912	Soybean	nucleus	21.97	24.17
KRH06474	Soybean	nucleus	21.51	23.71
KRH68208	Soybean	nucleus	19.85	21.97
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	19.85	21.91
KRH75137	Soybean	cytosol	2.48	21.26
KRH64461	Soybean	nucleus	20.68	21.23
KRH53486	Soybean	nucleus	20.5	20.9
KRH38763	Soybean	cytosol	6.07	18.91
KRH09264	Soybean	nucleus	6.07	18.91
KRH54981	Soybean	plastid	6.8	14.07
KRG94170	Soybean	nucleus	6.07	13.87
KRH28654	Soybean	nucleus	8.55	13.29
KRG96530	Soybean	cytosol, nucleus	8.18	13.13
KRH35109	Soybean	nucleus	5.7	12.92
KRG91687	Soybean	nucleus	5.79	12.7
KRH77020	Soybean	nucleus	9.93	12.54
KRH68267	Soybean	nucleus	8.55	12.5
KRH28444	Soybean	nucleus	9.83	12.43
KRH31789	Soybean	nucleus	9.38	11.72
KRH69214	Soybean	nucleus	9.28	11.64
KRH68336	Soybean	nucleus	8.27	11.06
KRH37214	Soybean	nucleus	10.02	8.88
KRH12193	Soybean	nucleus	9.93	8.81
KRH05241	Soybean	nucleus	14.15	7.58
KRH15817	Soybean	nucleus	13.88	7.52
KRH53306	Soybean	nucleus	8.92	4.75
KRH64610	Soybean	nucleus	8.27	4.32

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100806736	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.160.360	Gene3D:3.30.40.10
MapMan:35.1	EMBL:ACUP02005009	InterPro:EPHD	InterPro:FYrich_C	InterPro:FYrich_N	EnsemblPlantsGene:GLYMA_08G258500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259
GO:GO:0034968	GO:GO:0046872	UniProt:I1KWS1	InterPro:IPR000313	InterPro:IPR001214	InterPro:IPR003616
InterPro:IPR003888	InterPro:IPR003889	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR034732	EnsemblPlants:KRH45215
ProteinID:KRH45215	ProteinID:KRH45215.1	ProteinID:KRH45216.1	PFAM:PF00855	PFAM:PF00856	PFAM:PF05964
PFAM:PF05965	PFAM:PF13831	PFAM:PF13832	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS50280
PFscan:PS50812	PFscan:PS50868	PFscan:PS51542	PFscan:PS51543	PFscan:PS51805	PANTHER:PTHR13793
PANTHER:PTHR13793:SF126	InterPro:PWWP_dom	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00293
SMART:SM00317	SMART:SM00508	SMART:SM00541	SMART:SM00542	SUPFAM:SSF57903	SUPFAM:SSF63748
SUPFAM:SSF82199	UniParc:UPI0002338284	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:23271555..23289327

Molecular Weight (calculated)

122177.0 Da

IEP (calculated)

7.607

GRAVY (calculated)

-0.502

Length

1088 amino acids

Sequence
(BLAST)

0001: MAAAFQEGSG GGRGGDEDAT IDVHTTRGTP IRYLPLDHLY SATSPCRVTA SGSSNVMSKK IKARKLTLTH NNNNNNNNHY NNHEHKKTTS SSSSSLALPP
0101: KPPLLFVYSR RRKRHSPAAA TTENDESEKR LLKKRKIGST ELERLGVDLN TAIGDVDGPR LRECRNQFGN SGAAGNAKYG SLENLPKVLP ESRNVKKWVG
0201: LSFDNADPEA FVGLRCKVYW PMDLKAYIGY VRSYDKETKI HHVKYDDGDE ENLIIANENI RFHVSRDELK HLKLNFAKVR DNNVSDYNVE EMLALAASLD
0301: DCQDFEPGDI IWAKLTGHAM WPAVVLDESL ASNCKGLKMF LGGSSVPVQF FGTHDFARVR LQQVKSFLSG LLTDLHSKCK KHSFIEGLEE AKRYLSEQKL
0401: PLEMLELQKR CTADGCNNVS GEDGGCSDSG DDCLNGKGTL MALETVENFP YEVGDLQILS LGKIVKDSAF RDGRFIWPEG YTAVRKFTSV TDPKVSAPYK
0501: MEVLRDPESK LRPLFRVTVE GGEQFNGYTP SASWNEVYEK IKKMEKDASE GTVAEGGEEK GYESGSDMFG FSNPKVLKLI QGLSKSKISS KNSICKLGSR
0601: RCNNNLPLGY RQVHINWFDL DKCNVCHMDE EYENNLFLQC DKCRMMVHAR CYGELEPVNG VLWLCNLCRS GAPPPPCCLC PLIGGAMKPT TDGRWAHLAC
0701: AMWIPETCLA DVKRMEPIDG MSRISKDRWR LLCSICGVSY GACIQCSNNS CRVAYHPLCA RAAGLCVELE NEDRLYLLSV DDDEDQCIRL LSFCKKHRQP
0801: SNEHSVADDR IVRVSGLCSD YEPPPNPSGC ARSEPYDYFG RRGRKEPEAL AAASLKRLFV ENQPYLVGGY CQHGSLNNLE PSGRGVCSKF FCSQQRLRTS
0901: RIDTSNSILS ISEKYTYMRE TFRKRLAFGK SRIHGFGIFA KHPYKGGDMV IEYTGELVRP PIADRREHFI YNSLVGAGTY MFRIDDERVI DATRAGSIAH
1001: LINHSCAPNC YSRVISVNGD EHIIIFAKRD IKQWEELTYD YRFFSIDERL PCYCGFPKCR GIVNDTEAEE RAATLYAPRS ELIDWRGE

Best Arabidopsis Sequence Match ( AT1G05830.3 )
(BLAST)

0001: MISMSCVPKE EEGEDTQIKT ELHDHAADNP VRYASLESVY SVSSSSSSLC CKTAAGSHKK VNALKLPMSD SFELQPHRRP EIVHVYCRRK RRRRRRRESF
0101: LELAILQNEG VERDDRIVKI ESAELDDEKE EENKKKKQKK RRIGNGELMK LGVDSTTLSV SATPPLRGCR IKAVCSGNKQ DGSSRSKRNT VKNQEKVVTA
0201: SATAKKWVRL SYDGVDPKHF IGLQCKVFWP LDAVWYPGSI VGYNVETKHH IVKYGDGDGE ELALRREKIK FLISRDDMEL LNMKFGTNDV VVDGQDYDEL
0301: VILAASFEEC QDFEPRDIIW AKLTGHAMWP AIIVDESVIV KRKGLNNKIS GGRSVLVQFF GTHDFARIQV KQAVSFLKGL LSRSPLKCKQ PRFEEAMEEA
0401: KMYLKEYKLP GRMDQLQKVA DTDCSERINS GEEDSSNSGD DYTKDGEVWL RPTELGDCLH RIGDLQIINL GRIVTDSEFF KDSKHTWPEG YTATRKFISL
0501: KDPNASAMYK MEVLRDAESK TRPVFRVTTN SGEQFKGDTP SACWNKIYNR IKKIQIASDN PDVLGEGLHE SGTDMFGFSN PEVDKLIQGL LQSRPPSKVS
0601: QRKYSSGKYQ DHPTGYRPVR VEWKDLDKCN VCHMDEEYEN NLFLQCDKCR MMVHTRCYGQ LEPHNGILWL CNLCRPVALD IPPRCCLCPV VGGAMKPTTD
0701: GRWAHLACAI WIPETCLLDV KKMEPIDGVK KVSKDRWKLL CSICGVSYGA CIQCSNNTCR VAYHPLCARA AGLCVELADE DRLFLLSMDD DEADQCIRLL
0801: SFCKRHRQTS NYHLETEYMI KPAHNIAEYL PPPNPSGCAR TEPYNYLGRR GRKEPEALAG ASSKRLFVEN QPYIVGGYSR HEFSTYERIY GSKMSQITTP
0901: SNILSMAEKY TFMKETYRKR LAFGKSGIHG FGIFAKLPHR AGDMVIEYTG ELVRPPIADK REHLIYNSMV GAGTYMFRID NERVIDATRT GSIAHLINHS
1001: CEPNCYSRVI SVNGDEHIII FAKRDVAKWE ELTYDYRFFS IDERLACYCG FPRCRGVVND TEAEERQANI HASRCELKEW TES

Arabidopsis Description

ATX2Histone-lysine N-methyltransferase ATX2 [Source:UniProtKB/Swiss-Prot;Acc:P0CB22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.