Factsheet for VIT_05s0124g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01524	Soybean	nucleus	61.62	61.4
KRH45215	Soybean	nucleus	61.35	61.12
Bra021721.1-P	Field mustard	nucleus	53.78	60.6
CDY19078	Canola	nucleus	55.9	58.84
AT2G31650.1	Thale cress	nucleus	57.38	58.57
CDY15398	Canola	nucleus	55.44	58.12
AT1G05830.3	Thale cress	nucleus	57.75	57.8
GSMUA_Achr1P18360_001	Banana	nucleus	54.61	57.64
CDY06182	Canola	nucleus	56.27	57.44
CDY10007	Canola	nucleus	55.54	54.09
Os09t0134500-02	Rice	nucleus	50.74	53.82
EER96448	Sorghum	nucleus	49.54	52.65
Zm00001d019907_P003	Maize	nucleus	49.17	50.71
TraesCS5B01G163000.1	Wheat	nucleus, plastid	50.0	49.91
TraesCS5A01G165200.1	Wheat	plastid	50.0	49.91
TraesCS5D01G170100.5	Wheat	nucleus, plastid	49.54	47.52
HORVU5Hr1G051100.8	Barley	nucleus	50.18	47.35
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	1.85	37.04
VIT_15s0046g00760.t01	Wine grape	nucleus	22.51	23.42
VIT_16s0098g00350.t01	Wine grape	nucleus	21.68	21.78
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	5.44	15.73
VIT_16s0039g00740.t01	Wine grape	mitochondrion	6.37	15.2
VIT_11s0037g00880.t01	Wine grape	nucleus	6.83	14.98
VIT_18s0072g00220.t01	Wine grape	nucleus	4.98	14.59
VIT_07s0031g00320.t01	Wine grape	nucleus	9.59	11.91
VIT_07s0005g01490.t01	Wine grape	nucleus	9.04	11.33
VIT_04s0008g06180.t01	Wine grape	nucleus	10.52	10.06
VIT_18s0072g00200.t01	Wine grape	nucleus	4.7	9.9
VIT_00s0429g00030.t01	Wine grape	nucleus	7.1	6.94
VIT_18s0001g01700.t01	Wine grape	nucleus	6.55	6.81
VIT_05s0049g02100.t01	Wine grape	cytosol	0.37	4.44

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100263501	wikigene:100263501	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.160.360
Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB61588	ProteinID:CCB61588.1	InterPro:EPHD	UniProt:F6I3S0
EMBL:FN596743	InterPro:FYrich_C	InterPro:FYrich_N	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009628
GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	GO:GO:0042054	GO:GO:0046872	GO:GO:0048578
InterPro:IPR000313	InterPro:IPR001214	InterPro:IPR002999	InterPro:IPR003616	InterPro:IPR003888	InterPro:IPR003889
InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR034732	EntrezGene:LOC100263501	wikigene:LOC100263501	PFAM:PF00855
PFAM:PF00856	PFAM:PF05964	PFAM:PF05965	PFAM:PF13831	PFAM:PF13832	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS50280	PFscan:PS50304	PFscan:PS50812	PFscan:PS50868	PFscan:PS51542
PFscan:PS51543	PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF126	InterPro:PWWP_dom	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00249	SMART:SM00293	SMART:SM00317	SMART:SM00333	SMART:SM00541
SMART:SM00542	SUPFAM:SSF57903	SUPFAM:SSF63748	SUPFAM:SSF82199	InterPro:Tudor	UniParc:UPI0001983427
ArrayExpress:VIT_05s0124g00250	EnsemblPlantsGene:VIT_05s0124g00250	EnsemblPlants:VIT_05s0124g00250.t01	RefSeq:XP_002268621	RefSeq:XP_002268621.1	RefSeq:XP_010650471.1
RefSeq:XP_019075551.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:20735047..20798303

Molecular Weight (calculated)

122696.0 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.545

Length

1084 amino acids

Sequence
(BLAST)

0001: MAFPLKEEEE EVDSGTGTPV RYLPLRHVYS TSAPCVSASG SSNVVTKKVK ARRMIADGFD GEGDGVDQKP YPAKPPVVHV YARRRKRPRN LTAERPESGA
0101: LVAVKEERCE SDGCEGVGGG DRGVGVLGKK RRSANLEVKN LGDNSRGVGS SVRRRLREAR KDSTVDLPHR RKRKSSENLT KVDSNSACIK RWLWLNFDDV
0201: DPEKFIGLQC KVYWPLDGEW YRGCIIGYDL EANRHQVKYN DGDKEELILS SEKIKFYVSR EDMQHLNLSL SVRSLDSDDI DYDEMVVLAA SWNDCQDHEP
0301: GDIIWAKLTG HAMWPAIVVD ESIIHNRKGL NKISKEKSLP VQFFGSHDFA RVKTKQVTPF LKGLLSSFHL KCTKPHFHQS LVESKAYLSE QKLSKRMLRM
0401: QKLTEDDDCE SMSGEDEKRT DSGDDCIGDE RVKRKLDDLI KFPFEIGDLQ VIRLGKIVKD SDRFQVEGFI CPEGYTAMRK FTSITDPSLC ALYKMEVLRD
0501: AESKIQPLFR VTLDNGEQFQ GSTPSSCWNK IFRRIRKMQN SASDGSSAEG GAEKLNESGF DMFGFSNPEI FRLVQELSTS KISSKFSMSK SISRRYQDLS
0601: SGYRPVRVDW KDLDKCSVCH MDEEYENNLF LQCDKCRMMV HARCYGELEP VDGVLWLCKL CGPGAPDSPP PCCLCPVTGG AMKPTTDGRW AHLACAIWIP
0701: ETCLSDIKTM EPIDGLSRIN KDRWKLLCSI CGVSYGACIQ CSNSTCRVAY HPLCARAAGL CVELEDEDRL HLISVEDDED DQCIRLLSFC KKHRQPSNER
0801: TAFDERIGQV ARECSNYNPP SNPSGCARTE PYNHFGRRGR KEPEALAAAS LKRLFVDNRP YLVGGYCQHE SLGNPLSSSA LSGSKFSFRN QKIKASQLDA
0901: PKSILSMVEK YNYMRETFRK RLAFGKSGIH GFGIFAKQPH RAGDMVIEYT GELVRPSIAD RRERLIYNSL VGAGTYMFRI DDERVIDATR AGSIAHLINH
1001: SCEPNCYSRV ISFNGDDHII IFAKRDIKRW EELTYDYRFF SIDEQLACYC GFPRCRGVVN DIDAEERMAK RYAPRSELIG WIGE

Best Arabidopsis Sequence Match ( AT1G05830.3 )
(BLAST)

0001: MISMSCVPKE EEGEDTQIKT ELHDHAADNP VRYASLESVY SVSSSSSSLC CKTAAGSHKK VNALKLPMSD SFELQPHRRP EIVHVYCRRK RRRRRRRESF
0101: LELAILQNEG VERDDRIVKI ESAELDDEKE EENKKKKQKK RRIGNGELMK LGVDSTTLSV SATPPLRGCR IKAVCSGNKQ DGSSRSKRNT VKNQEKVVTA
0201: SATAKKWVRL SYDGVDPKHF IGLQCKVFWP LDAVWYPGSI VGYNVETKHH IVKYGDGDGE ELALRREKIK FLISRDDMEL LNMKFGTNDV VVDGQDYDEL
0301: VILAASFEEC QDFEPRDIIW AKLTGHAMWP AIIVDESVIV KRKGLNNKIS GGRSVLVQFF GTHDFARIQV KQAVSFLKGL LSRSPLKCKQ PRFEEAMEEA
0401: KMYLKEYKLP GRMDQLQKVA DTDCSERINS GEEDSSNSGD DYTKDGEVWL RPTELGDCLH RIGDLQIINL GRIVTDSEFF KDSKHTWPEG YTATRKFISL
0501: KDPNASAMYK MEVLRDAESK TRPVFRVTTN SGEQFKGDTP SACWNKIYNR IKKIQIASDN PDVLGEGLHE SGTDMFGFSN PEVDKLIQGL LQSRPPSKVS
0601: QRKYSSGKYQ DHPTGYRPVR VEWKDLDKCN VCHMDEEYEN NLFLQCDKCR MMVHTRCYGQ LEPHNGILWL CNLCRPVALD IPPRCCLCPV VGGAMKPTTD
0701: GRWAHLACAI WIPETCLLDV KKMEPIDGVK KVSKDRWKLL CSICGVSYGA CIQCSNNTCR VAYHPLCARA AGLCVELADE DRLFLLSMDD DEADQCIRLL
0801: SFCKRHRQTS NYHLETEYMI KPAHNIAEYL PPPNPSGCAR TEPYNYLGRR GRKEPEALAG ASSKRLFVEN QPYIVGGYSR HEFSTYERIY GSKMSQITTP
0901: SNILSMAEKY TFMKETYRKR LAFGKSGIHG FGIFAKLPHR AGDMVIEYTG ELVRPPIADK REHLIYNSMV GAGTYMFRID NERVIDATRT GSIAHLINHS
1001: CEPNCYSRVI SVNGDEHIII FAKRDVAKWE ELTYDYRFFS IDERLACYCG FPRCRGVVND TEAEERQANI HASRCELKEW TES

Arabidopsis Description

ATX2Histone-lysine N-methyltransferase ATX2 [Source:UniProtKB/Swiss-Prot;Acc:P0CB22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.