Factsheet for VIT_04s0008g06180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0556700-01	Rice	nucleus	24.1	51.8
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	1.41	29.63
KRH05241	Soybean	nucleus	49.87	27.81
KRH15817	Soybean	nucleus	48.81	27.54
GSMUA_Achr7P17070_001	Banana	nucleus	43.87	24.52
KXG36166	Sorghum	nucleus, plastid	32.74	19.48
Zm00001d006323_P069	Maize	nucleus	32.39	18.73
TraesCS5A01G357600.1	Wheat	plastid	30.54	17.91
TraesCS5B01G360200.1	Wheat	plastid	30.45	17.88
TraesCS5D01G366700.1	Wheat	plastid	30.1	17.6
HORVU5Hr1G088420.21	Barley	plastid	30.1	17.46
VIT_18s0072g00220.t01	Wine grape	nucleus	4.77	14.59
VIT_11s0037g00880.t01	Wine grape	nucleus	6.18	14.17
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	4.68	14.13
VIT_16s0039g00740.t01	Wine grape	mitochondrion	5.56	13.88
VIT_15s0046g00760.t01	Wine grape	nucleus	11.56	12.57
VIT_16s0098g00350.t01	Wine grape	nucleus	11.03	11.58
VIT_05s0124g00250.t01	Wine grape	nucleus	10.06	10.52
VIT_18s0072g00200.t01	Wine grape	nucleus	4.59	10.1
VIT_07s0005g01490.t01	Wine grape	nucleus	6.62	8.67
VIT_07s0031g00320.t01	Wine grape	nucleus	6.35	8.25
VIT_05s0049g02100.t01	Wine grape	cytosol	0.62	7.78
VIT_18s0001g01700.t01	Wine grape	nucleus	6.35	6.91
VIT_00s0429g00030.t01	Wine grape	nucleus	6.62	6.76
TraesCS5A01G357700.1	Wheat	mitochondrion	0.18	2.5

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:2.170.270.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM452395	ProteinID:CAN76638
ProteinID:CAN76638.1	ProteinID:CCB46846	ProteinID:CCB46846.1	ncoils:Coil	InterPro:EPHD	UniProt:F6H3V7
EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	GO:GO:0035556	GO:GO:0046872
InterPro:IPR001214	InterPro:IPR002219	InterPro:IPR003616	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR034732
InterPro:PE/DAG-bd	PFAM:PF00856	PFAM:PF13831	PFAM:PF13832	PFscan:PS50016	PFscan:PS50081
PFscan:PS50280	PFscan:PS50868	PFscan:PS51805	PANTHER:PTHR22884	PANTHER:PTHR22884:SF454	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00249	SMART:SM00317	SMART:SM00508	SUPFAM:SSF57903	SUPFAM:SSF82199
UniParc:UPI000210955A	ArrayExpress:VIT_04s0008g06180	EnsemblPlantsGene:VIT_04s0008g06180	EnsemblPlants:VIT_04s0008g06180.t01	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:5938172..5970124

Molecular Weight (calculated)

126796.0 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.665

Length

1133 amino acids

Sequence
(BLAST)

0001: MGGMNGKPSM LFTTRFHKDH IVQKEKNISF HQNEKSKGQN HKKIDCHASQ WKDVPSKVIV SCDMKCVRPS VDGLGGRKND EDQPAMYGRK NDEDQLADTA
0101: AKRFNGNLQE INCLKEQEMS NISSGCSAPA VTQASIEVNN MDSCTVDAGD TGCANDLVVD EASGIEKCWS SDDALDSERS AEFLGFTCKT SFIKEGSSKA
0201: LANQSSRSLI DELKFRDSFR WKRVRNESHT GLAIHEKNSH SPKIERGLKT RKRKKTMKMK MLNASFPASG FSSGHYEHTE CAGSAEWRSF SYKDVDTLLQ
0301: CELGTSHTCG ACTIGPSFKR RRSTLSSAKN FSRKRDVDKI YADREGEDGY QAQSKGKTEF LSIHEVSGAK RIGPDRTAEA FRQFCMQEPS HTKAVKYNSV
0401: GCVKESSCLK LDVSNRREKP VVCGKYGVIS NGKLAIDVPK PAKIFSLSRV LKTARRCTLS ANDEPRLTSM RQLKKARLRG SNGCVNEISN LMKEKENEIQ
0501: NATRCDERNP DNSMEEAEKA VISGDTRCAD ELLMSKQEKA YGSKKDDSYH STRLKRKYKE IRKRSLYELT GKGKSPSSGN AFVKIPKHAP QKKSGSVGLE
0601: NAEDSKHSMS ESYKVNSKKS IKEHRFESFI SDTDAFCCVC GSSNKDEINC LLECSRCLIR VHQACYGVSR VPKGRWYCRP CRTSSKNIVC VLCGYGGGAM
0701: TRALRTRNIV KSLLKVWNIE TESWPKSSVP PEALQDKLGT LDSSRSGLEN ESFPVLRPLD IEPSTTTAWN MDLQNRSDIT KNLSCSLGNL KIHNTITAGI
0801: LDSTVKQWVH MVCGLWTPGT RCPNVDTMSA FDVSGASRPR ANVICSICNR PGGSCIKCRV LNCLVPFHPW CAHRKGLLQS EVEGVDNENV GFYGRCMLHA
0901: AHPSCELDSD PINIETDSTG EKELTCARTE GYKGRKQEGF RHNLNFQSNG NGGCLVPQEQ LNAWLHINGQ KSCTKGLPKT PISDVEYDCR KEFARYKQAK
1001: GWKHLVVYKS GIHALGLYTS RFISRGAMVV EYVGEIVGLR VADKRESDYQ SGRKLQYKTA CYFFRIDKEH IIDATRKGGI ARFVNHSCLV VFFAERDINP
1101: GEEITYDYHF NHEDEGKKIP CFCNSRNCRR YLN

Best Arabidopsis Sequence Match ( AT1G05830.3 )
(BLAST)

0001: MISMSCVPKE EEGEDTQIKT ELHDHAADNP VRYASLESVY SVSSSSSSLC CKTAAGSHKK VNALKLPMSD SFELQPHRRP EIVHVYCRRK RRRRRRRESF
0101: LELAILQNEG VERDDRIVKI ESAELDDEKE EENKKKKQKK RRIGNGELMK LGVDSTTLSV SATPPLRGCR IKAVCSGNKQ DGSSRSKRNT VKNQEKVVTA
0201: SATAKKWVRL SYDGVDPKHF IGLQCKVFWP LDAVWYPGSI VGYNVETKHH IVKYGDGDGE ELALRREKIK FLISRDDMEL LNMKFGTNDV VVDGQDYDEL
0301: VILAASFEEC QDFEPRDIIW AKLTGHAMWP AIIVDESVIV KRKGLNNKIS GGRSVLVQFF GTHDFARIQV KQAVSFLKGL LSRSPLKCKQ PRFEEAMEEA
0401: KMYLKEYKLP GRMDQLQKVA DTDCSERINS GEEDSSNSGD DYTKDGEVWL RPTELGDCLH RIGDLQIINL GRIVTDSEFF KDSKHTWPEG YTATRKFISL
0501: KDPNASAMYK MEVLRDAESK TRPVFRVTTN SGEQFKGDTP SACWNKIYNR IKKIQIASDN PDVLGEGLHE SGTDMFGFSN PEVDKLIQGL LQSRPPSKVS
0601: QRKYSSGKYQ DHPTGYRPVR VEWKDLDKCN VCHMDEEYEN NLFLQCDKCR MMVHTRCYGQ LEPHNGILWL CNLCRPVALD IPPRCCLCPV VGGAMKPTTD
0701: GRWAHLACAI WIPETCLLDV KKMEPIDGVK KVSKDRWKLL CSICGVSYGA CIQCSNNTCR VAYHPLCARA AGLCVELADE DRLFLLSMDD DEADQCIRLL
0801: SFCKRHRQTS NYHLETEYMI KPAHNIAEYL PPPNPSGCAR TEPYNYLGRR GRKEPEALAG ASSKRLFVEN QPYIVGGYSR HEFSTYERIY GSKMSQITTP
0901: SNILSMAEKY TFMKETYRKR LAFGKSGIHG FGIFAKLPHR AGDMVIEYTG ELVRPPIADK REHLIYNSMV GAGTYMFRID NERVIDATRT GSIAHLINHS
1001: CEPNCYSRVI SVNGDEHIII FAKRDVAKWE ELTYDYRFFS IDERLACYCG FPRCRGVVND TEAEERQANI HASRCELKEW TES

Arabidopsis Description

ATX2Histone-lysine N-methyltransferase ATX2 [Source:UniProtKB/Swiss-Prot;Acc:P0CB22]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.