Factsheet for VIT_07s0031g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0013g00860.t01
VIT_16s0013g01550.t01
VIT_19s0014g05210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23380.1	VIT_19s0014g05210.t01	AT3G20740.1	14871310
AT2G23380.1	VIT_19s0014g05210.t01	AT3G20740.1	15456723
AT2G23380.1	VIT_19s0014g05210.t01	AT3G20740.1	18812497
AT2G23380.1	VIT_16s0013g00860.t01	AT5G51230.1	15456723
AT2G23380.1	VIT_16s0013g01550.t01	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77020	Soybean	nucleus	69.64	70.62
KRH28444	Soybean	nucleus	69.64	70.62
GSMUA_AchrUn_...	Banana	nucleus	59.56	67.44
VIT_05s0049g02100.t01	Wine grape	cytosol	6.76	65.56
Solyc03g044380.2.1	Tomato	nucleus	68.96	65.36
PGSC0003DMT400084490	Potato	nucleus	68.73	65.08
AT2G23380.1	Thale cress	nucleus	64.15	62.08
Bra032169.1-P	Field mustard	nucleus, plastid	64.26	61.85
CDY38942	Canola	nucleus, plastid	64.26	61.85
CDX89569	Canola	nucleus, plastid	63.92	61.32
Os06t0275500-01	Rice	nucleus	62.66	61.05
TraesCS7D01G127100.2	Wheat	nucleus	61.05	60.09
TraesCS7A01G128300.1	Wheat	nucleus	60.94	59.98
TraesCS7B01G028200.2	Wheat	nucleus	60.6	59.64
EER89265	Sorghum	plastid	63.69	59.59
HORVU7Hr1G026840.1	Barley	cytosol, mitochondrion, nucleus	61.05	58.0
PGSC0003DMT400010235	Potato	nucleus	51.66	55.07
Zm00001d036296_P004	Maize	nucleus, plastid	61.05	54.17
HORVU7Hr1G026910.29	Barley	cytosol, nucleus	45.59	50.57
TraesCS7B01G028500.2	Wheat	nucleus	46.16	50.25
TraesCS7D01G127400.1	Wheat	nucleus	45.82	49.88
TraesCS7A01G128600.1	Wheat	nucleus	45.25	49.31
VIT_07s0005g01490.t01	Wine grape	nucleus	45.93	46.36
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	1.83	29.63
VIT_18s0072g00220.t01	Wine grape	nucleus	7.67	18.11
VIT_11s0037g00880.t01	Wine grape	nucleus	9.85	17.41
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	6.99	16.27
VIT_16s0039g00740.t01	Wine grape	mitochondrion	7.22	13.88
VIT_18s0072g00200.t01	Wine grape	nucleus	7.79	13.2
VIT_15s0046g00760.t01	Wine grape	nucleus	13.06	10.94
VIT_16s0098g00350.t01	Wine grape	nucleus	12.94	10.47
VIT_05s0124g00250.t01	Wine grape	nucleus	11.91	9.59
VIT_18s0001g01700.t01	Wine grape	nucleus	7.9	6.62
VIT_00s0429g00030.t01	Wine grape	nucleus	8.36	6.58
VIT_04s0008g06180.t01	Wine grape	nucleus	8.25	6.35

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100249229	wikigene:100249229	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10
EMBL:AM444329	ProteinID:CAN74088	ProteinID:CAN74088.1	ProteinID:CCB47057	ProteinID:CCB47057.1	InterPro:CXC_dom
UniProt:F6H4J2	EMBL:FN595233	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003727	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342
GO:GO:0006349	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009058	GO:GO:0009294	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009965
GO:GO:0009987	GO:GO:0010228	GO:GO:0016043	GO:GO:0016310	GO:GO:0016571	GO:GO:0016740
GO:GO:0016772	GO:GO:0018024	GO:GO:0019538	GO:GO:0031519	GO:GO:0032259	GO:GO:0034968
GO:GO:0040029	GO:GO:0045857	GO:GO:0048586	GO:GO:0070734	InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214
InterPro:IPR025778	InterPro:IPR026489	EntrezGene:LOC100249229	wikigene:LOC100249229	PFAM:PF00856	PFscan:PS50280
PFscan:PS51576	PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317
SMART:SM01114	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI00021086FE	ArrayExpress:VIT_07s0031g00320	EnsemblPlantsGene:VIT_07s0031g00320
EnsemblPlants:VIT_07s0031g00320.t01	RefSeq:XP_002278164	RefSeq:XP_002278164.1	RefSeq:XP_019076670.1	SEG:seg	:

Description

Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:F6H4J2]

Coordinates

chr7:+:16560355..16572259

Molecular Weight (calculated)

98598.4 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.817

Length

873 amino acids

Sequence
(BLAST)

001: MEENRQRLVG ITKHLHKLSE ERRNNRNSDI DKSVDLLTKR QRDALDMQNG NDANNGDKAS HCSQEDGHVS SAVLLGSSIA VKNAVRPIKL TEVKRLPPYT
101: TWIFLDRNQR MTEDQSVVGR RRIYYDQTGG EALICSDSEE EAIEEEEEKK EFADFEDYIL RMTIKETGLS DPVLEALGRY LSRKPCEVKA RYEILNKGEK
201: SVVGSKNGVI EDISQTLTSY LDKDLDAALD SFDNLFCRRC LVFDCRLHGC SQDLVSPAEK QLPWNHLDED NIPCGAHCYR LAVKSESIGM VSSPVCADFE
301: DKTAPSSDGA GPHLSSRKNC GPSSKRRAKS CQSESASSNG KNISESSDSE IRPKQDTTST HHSSSPPKTR LVGKCAIRKR NSKRVAERVL VCMRKRQKMV
401: ASDSDSILSG RLWPRDMKLR SNSRKENEDA SSSSLKKVKP SITGRSRRKC SPVQDSNKLV EGEVPEGQMN EMINDPPASS SDDTLRKEEF VDESMCKQER
501: SDDKSWKAIE KGFFEKGVEI FGRNSCLIAR NLLNGMKTCL EVFQFMNCSE NKPFFRAGDG SNSMVEGYSK VDFNETMGNE VRRRSRFLRR RGRVRRLKYT
601: WKSAGYHSIR KRISERKDQP CRQYNPCGCQ SACGKQCACL LNGTCCEKYC GCPKSCKNRF RGCHCAKSQC RSRQCPCFAA DRECDPDVCR NCWISCGDGT
701: LGVPSQRGDN YECRNMKLLL KQQQRVLLGR SDVSGWGAFL KNSVGKHEYL GEYTGELISH READKRGKIY DRENSSFLFN LNDQFVLDAY RKGDKLKFAN
801: HSPDPNCYAK VIMVAGDHRV GIFAKERISA GEELFYDYRY EPDRAPAWAR KPEASGVKKE DVAPSSGRAK KLA

Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)

001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA

Arabidopsis Description

CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.