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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 6
  • plastid 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002667.1-P
Bra005262.1-P
Bra005316.1-P
Bra015200.1-P
Bra020379.1-P
Bra021078.1-P
Bra022541.1-P
Bra023933.1-P
Bra040097.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G23380.1 Bra005262.1-P AT2G35670.1 15456723
AT2G23380.1 Bra005316.1-P AT2G35670.1 15456723
AT2G23380.1 Bra023933.1-P AT3G20740.1 14871310
AT2G23380.1 Bra023933.1-P AT3G20740.1 15456723
AT2G23380.1 Bra023933.1-P AT3G20740.1 18812497
AT2G23380.1 Bra021078.1-P AT4G16845.1 15456723
AT2G23380.1 Bra040097.1-P AT4G16845.1 15456723
AT2G23380.1 Bra015200.1-P AT5G51230.1 15456723
AT2G23380.1 Bra022541.1-P AT5G51230.1 15456723
AT2G23380.1 Bra002667.1-P AT5G58230.1 23778966
AT2G23380.1 Bra020379.1-P AT5G58230.1 23778966
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38942 Canola nucleus, plastid 99.67 99.67
CDX89569 Canola nucleus, plastid 98.57 98.24
AT2G23380.1 Thale cress nucleus 86.99 87.47
KRH28444 Soybean nucleus 61.19 64.46
VIT_07s0031g00320.t01 Wine grape nucleus 61.85 64.26
KRH77020 Soybean nucleus 60.2 63.41
GSMUA_AchrUn_... Banana nucleus 51.05 60.05
PGSC0003DMT400084490 Potato nucleus 58.43 57.48
Solyc03g044380.2.1 Tomato nucleus 57.88 57.0
TraesCS7A01G128300.1 Wheat nucleus 53.69 54.9
TraesCS7D01G127100.2 Wheat nucleus 53.58 54.79
TraesCS7B01G028200.2 Wheat nucleus 53.58 54.79
EER89265 Sorghum plastid 55.57 54.02
Os06t0275500-01 Rice nucleus 53.36 54.02
HORVU7Hr1G026840.1 Barley cytosol, mitochondrion, nucleus 53.91 53.21
Zm00001d036296_P004 Maize nucleus, plastid 54.47 50.2
PGSC0003DMT400010235 Potato nucleus 44.1 48.84
TraesCS7B01G028500.2 Wheat nucleus 42.78 48.38
TraesCS7D01G127400.1 Wheat nucleus 42.12 47.63
TraesCS7A01G128600.1 Wheat nucleus 41.9 47.44
HORVU7Hr1G026910.29 Barley cytosol, nucleus 40.9 47.14
Bra036300.1-P Field mustard nucleus 35.72 41.54
Bra033334.1-P Field mustard nucleus 25.47 36.21
Bra032592.1-P Field mustard nucleus 24.81 35.21
Bra007496.1-P Field mustard nucleus 6.95 18.31
Bra004809.1-P Field mustard nucleus 7.06 17.3
Bra000343.1-P Field mustard cytosol 6.84 17.13
Bra003396.1-P Field mustard cytosol 4.63 16.22
Bra010270.1-P Field mustard nucleus 8.49 15.59
Bra015723.1-P Field mustard nucleus 7.06 13.88
Bra003056.1-P Field mustard nucleus 9.7 12.17
Bra040838.1-P Field mustard mitochondrion, nucleus 12.13 11.8
Bra021721.1-P Field mustard nucleus 10.36 9.77
Bra003467.1-P Field mustard nucleus 10.8 9.47
Bra027983.1-P Field mustard nucleus 9.92 6.94
Bra015678.1-P Field mustard nucleus 10.47 5.73
Protein Annotations
KEGG:00310+2.1.1.43MapMan:12.3.3.1.1.4MapMan:12.3.3.3Gene3D:2.170.270.10ProteinID:AAN86552ProteinID:AAN86552.1
ProteinID:AAO32053ProteinID:AAO32053.1EMBL:AY166505EMBL:AY185351EnsemblPlantsGene:Bra032169EnsemblPlants:Bra032169.1
EnsemblPlants:Bra032169.1-PInterPro:CXC_domGO:GO:0000003GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003727GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005677GO:GO:0006139GO:GO:0006342
GO:GO:0006349GO:GO:0006464GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0008168
GO:GO:0009058GO:GO:0009294GO:GO:0009628GO:GO:0009653GO:GO:0009791GO:GO:0009965
GO:GO:0009987GO:GO:0010228GO:GO:0016043GO:GO:0016571GO:GO:0016740GO:GO:0018024
GO:GO:0019538GO:GO:0031519GO:GO:0032259GO:GO:0034968GO:GO:0040029GO:GO:0045857
GO:GO:0048586GO:GO:0070734InterPro:Hist-Lys_N-MeTrfase_EZInterPro:IPR001214InterPro:IPR025778InterPro:IPR026489
UniProt:M4ETN7PFAM:PF00856PFscan:PS50280PFscan:PS51576PFscan:PS51633PANTHER:PTHR22884
PANTHER:PTHR22884:SF237InterPro:SET_domSMART:SM00317SMART:SM01114SUPFAM:SSF82199InterPro:Tesmin/TSO1-like_CXC
UniParc:UPI00025445D5SEG:seg::::
Description
AT2G23380 (E=0.0) CLF, ICU1, SDG1, SET1 | CLF (CURLY LEAF); transcription factor
Coordinates
chrA04:+:10381346..10386277
Molecular Weight (calculated)
100722.0 Da
IEP (calculated)
8.977
GRAVY (calculated)
-0.869
Length
907 amino acids
Sequence
(BLAST)
001: MASGASPSSS ATRSDPHKHS TTSQAEKRAP ASKEVSAVID SLKKKLAADR CISIKRRIDE NKKNVRGITQ STMRSCMERG GGSYKDGSDL LVKRQRDSPG
101: MKSGVNASDA DKSNNHSSFL EDGNASSTTM VQGSSVPVKI SLRPIKMPDV KRLSPYTTWV FLDRNQRMTE DQSVVGRRRI YYDQTGGEAL ICSDSEEEAI
201: DEEDEKRAFL EPEDFIIRMT LDQLGLSDSV LEELANFLSR SSSEIKARYE VLMKEKEVSE SGDNQAESSL LNKDMDGALD SFDNLFCRRC LVFDCRLHGC
301: SQDLIFPAEK PAPWTPPVDE NLTCGANCYK TLLKSNRIPA NGTTEDKTGT SSDGAGTKTT SKFSGKLNRK KTKTFPSESA SSNEKCTPET SDSENGVQQD
401: TNPEKVSSTS KVKASGRRGG RKRNNNRVAE RVSRRTQKRQ KKSEASDTDS IATGSRSASD AKHKDNEDAT SSSQKHVKSG SSKNSRKNDT PVDDSKNSVK
501: GDDPVSQLNA VASEPCSDGS LRKEEFVGEN VCPGGLSEDK SWRPLEKSLF QKGVEIFGMN SCMIARNLLC GLKSCWEVFQ YMTCSENKAS FFGGDALNPD
601: GSSKFDINGN MTNNQVRRRS RFLRRRGKVR RLKYTWKSAA YHSIRKRSTD KKDQPCRQFN PCNCKTACGK ECTCLLNGTC CEKYCGCPKS CKNRFRGCHC
701: AKSQCRSRQC PCFAADRECD PDVCRNCWVI GGDGTLGVPS QRGDNYECRN MKLLLKQQQR VLLGISDVSG WGAFLKNSVS KHEYLGEYTG ELISHKEADK
801: RGKIYDRENS SFLFNLNDQA HAYRKGDKLK FANHSPEPNC YAKVIMVAGD HRVGIFAKER ILAGEELFYD YRYEPDRAPA WARKPEASGS KKDENVTPSV
901: GRPKKVA
Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)
001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA
Arabidopsis Description
CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.