Factsheet for Bra032592.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002667.1-P
Bra005262.1-P
Bra005316.1-P
Bra020379.1-P
Bra023933.1-P
Bra032592.1-P
Bra033334.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	Bra032592.1-P	AT1G02580.1	10962025
AT1G02580.1	Bra033334.1-P	AT1G02580.1	10962025
AT1G02580.1	Bra032592.1-P	AT1G02580.1	11148284
AT1G02580.1	Bra033334.1-P	AT1G02580.1	11148284
AT1G02580.1	Bra005262.1-P	AT2G35670.1	15456723
AT1G02580.1	Bra005316.1-P	AT2G35670.1	15456723
AT1G02580.1	Bra005262.1-P	AT2G35670.1	16924116
AT1G02580.1	Bra005316.1-P	AT2G35670.1	16924116
AT1G02580.1	Bra023933.1-P	AT3G20740.1	10962025
AT1G02580.1	Bra023933.1-P	AT3G20740.1	11114524
AT1G02580.1	Bra023933.1-P	AT3G20740.1	11148284
AT1G02580.1	Bra023933.1-P	AT3G20740.1	15456723
AT1G02580.1	Bra023933.1-P	AT3G20740.1	15469499
AT1G02580.1	Bra023933.1-P	AT3G20740.1	18812497
AT1G02580.1	Bra002667.1-P	AT5G58230.1	12970192
AT1G02580.1	Bra020379.1-P	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32472	Canola	nucleus	96.4	95.8
Bra033334.1-P	Field mustard	nucleus	60.56	60.66
AT1G02580.1	Thale cress	nucleus	57.9	53.7
KRG96530	Soybean	cytosol, nucleus	34.27	32.3
KRH28654	Soybean	nucleus	34.43	31.43
KRH68267	Soybean	nucleus	35.37	30.38
Bra036300.1-P	Field mustard	nucleus	35.84	29.36
KRH69214	Soybean	nucleus	38.34	28.23
KRH31789	Soybean	nucleus	37.87	27.82
KRH68336	Soybean	nucleus	35.21	27.64
GSMUA_Achr1P24850_001	Banana	nucleus	36.93	26.79
Os03t0307800-01	Rice	nucleus	36.46	26.03
KXG40039	Sorghum	nucleus	36.46	25.92
TraesCS4B01G181400.3	Wheat	nucleus, plastid	35.84	25.73
TraesCS4D01G184600.3	Wheat	nucleus, plastid	35.84	25.73
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	35.84	25.11
Bra032169.1-P	Field mustard	nucleus, plastid	35.21	24.81
Zm00001d047636_P002	Maize	nucleus	33.65	24.21
TraesCS4A01G121300.4	Wheat	mitochondrion	35.68	23.55
Zm00001d028890_P002	Maize	nucleus	33.8	19.44
Bra007496.1-P	Field mustard	nucleus	8.29	15.41
Bra004809.1-P	Field mustard	nucleus	8.45	14.59
Bra000343.1-P	Field mustard	cytosol	7.98	14.09
Bra003396.1-P	Field mustard	cytosol	5.63	13.9
Bra010270.1-P	Field mustard	nucleus	10.64	13.77
Bra015723.1-P	Field mustard	nucleus	8.92	12.36
Bra003056.1-P	Field mustard	nucleus	11.27	9.96
Bra040838.1-P	Field mustard	mitochondrion, nucleus	12.83	8.8
Bra021721.1-P	Field mustard	nucleus	11.27	7.48
Bra003467.1-P	Field mustard	nucleus	11.42	7.05
Bra027983.1-P	Field mustard	nucleus	11.89	5.86
Bra015678.1-P	Field mustard	nucleus	12.99	5.01

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	EnsemblPlantsGene:Bra032592	EnsemblPlants:Bra032592.1
EnsemblPlants:Bra032592.1-P	InterPro:CXC_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031519	InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214
InterPro:IPR025778	InterPro:IPR026489	UniProt:M4EUW0	PFAM:PF00856	PFscan:PS50280	PFscan:PS51633
PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317	SMART:SM01114	SUPFAM:SSF82199
InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0002543087	SEG:seg	:	:	:

Description

AT1G02580 (E=2e-116) MEA, EMB173, FIS1, SDG5 | MEA (MEDEA); sequence-specific DNA binding / transcription factor

Coordinates

chrA09:-:36751484..36755701

Molecular Weight (calculated)

72964.1 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.737

Length

639 amino acids

Sequence
(BLAST)

001: MLFRGFVQEN HEGENLPPEL NQIKEQIERE RFLHIQKSFA DRPSVVTHAA YHHSLASTRG AGVNNDGGDN NMLSLRIKTP LHIFKYNPPE EFTSPLPKKQ
101: VIKLPIVKQL PRAITWVFTD SNKLMAESDS VIGKKQIIYV KGQAEELSSN DEEDEEETEK EKLEFSKDAD QFIWEVGQKH NLDDLVVQSA LSKFFELDVS
201: DILERYNDLK KLKINEGDTG EVSDVRIFTS SPETTERRFC RRCLRFDCRV HEEDQPEIYN LKGVTEADHM VDNDNYVSNK KGKNVVSEMS QAYNEWTSVE
301: MDLYLKGAKL FGKNSCLITR NALPGLKTCL EVYNYMHEQD QYKMLLEHEE TSETDNQVNK ETSRKKRRLV RKKVKLQKHI YPAAIKNTMN EIEKSYKQYT
401: PCPCEPVCGD QCLCFRNGNC CEIYCGCPKT CNNRFGGCNC TKGQCINLKC PCFSNFRECN PDQCRSCSLS CGDGHGSLGE TSKTSECKNM QLLLKKHKKI
501: LLGMSNVHGW GAFTRHSLKQ NEFLGEYTGE LVSVDEAEER ERADHKLGYS YLFNLNDKFV IDSRRQGNKF RFLNHSSNPN CCAQVMIVKG DQRIGLFAGK
601: AIREGEELFF EYKPGEADRS PSISSDSGSS KSENSSSST

Best Arabidopsis Sequence Match ( AT1G02580.1 )
(BLAST)

001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR

Arabidopsis Description

MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.