Factsheet for Bra040838.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29869	Canola	mitochondrion	96.89	94.36
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	5.04	87.04
Os01t0655300-01	Rice	cytosol, nucleus	4.18	75.0
AT4G27910.1	Thale cress	nucleus	81.01	73.52
Bra003056.1-P	Field mustard	nucleus	52.25	67.36
KRH64461	Soybean	nucleus	66.52	58.49
KRH53486	Soybean	nucleus	66.31	57.92
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	59.76	56.78
VIT_16s0098g00350.t01	Wine grape	nucleus	64.81	55.98
Zm00001d044020_P001	Maize	cytosol	14.38	52.34
GSMUA_Achr10P...	Banana	nucleus	54.08	51.69
GSMUA_Achr2P06290_001	Banana	nucleus	51.72	50.79
GSMUA_Achr8P28030_001	Banana	nucleus	51.39	47.95
OQU87254	Sorghum	nucleus	45.06	47.35
TraesCS3B01G265800.1	Wheat	nucleus	49.36	44.75
TraesCS3D01G237600.2	Wheat	nucleus	49.03	44.72
HORVU3Hr1G059080.11	Barley	cytosol, mitochondrion, nucleus, plastid	49.14	44.68
TraesCS3A01G237200.2	Wheat	nucleus	49.25	44.65
Zm00001d011490_P003	Maize	nucleus	49.57	44.51
Bra003467.1-P	Field mustard	nucleus	45.28	40.77
Bra021721.1-P	Field mustard	nucleus	21.67	21.0
Bra003396.1-P	Field mustard	cytosol	5.79	20.85
Bra004809.1-P	Field mustard	nucleus	7.51	18.92
Bra007496.1-P	Field mustard	nucleus	6.97	18.9
Bra000343.1-P	Field mustard	cytosol	7.3	18.78
Bra010270.1-P	Field mustard	nucleus	8.37	15.79
Bra015723.1-P	Field mustard	nucleus	6.97	14.1
Bra033334.1-P	Field mustard	nucleus	9.23	13.48
Bra032592.1-P	Field mustard	nucleus	8.8	12.83
Bra032169.1-P	Field mustard	nucleus, plastid	11.8	12.13
Bra036300.1-P	Field mustard	nucleus	10.09	12.05
Bra027983.1-P	Field mustard	nucleus	11.37	8.17
Bra015678.1-P	Field mustard	nucleus	8.8	4.95

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra040838
EnsemblPlants:Bra040838.1	EnsemblPlants:Bra040838.1-P	InterPro:EPHD	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	GO:GO:0046872	GO:GO:0051571
InterPro:Hist-Lys_N-MeTrfase_ATX	InterPro:IPR000313	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR013083	InterPro:IPR019787
InterPro:IPR025780	InterPro:IPR034732	UniProt:M4FIA9	PFAM:PF00628	PFAM:PF00855	PFAM:PF00856
PFAM:PF13832	PFscan:PS50016	PFscan:PS50280	PFscan:PS50812	PFscan:PS50868	PFscan:PS51566
PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF5	InterPro:PWWP_dom	InterPro:Post-SET_dom	InterPro:SET_dom
SMART:SM00249	SMART:SM00317	SMART:SM00508	SUPFAM:SSF57903	SUPFAM:SSF63748	SUPFAM:SSF82199
UniParc:UPI00025461B0	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT4G27910 (E=2e-220) ATX4, SDG16 | SDG16 (SET DOMAIN PROTEIN 16); protein binding / zinc ion binding

Coordinates

chrA08:+:12054826..12059998

Molecular Weight (calculated)

104970.0 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.482

Length

932 amino acids

Sequence
(BLAST)

001: MIIKRELKTQ MIPSLKRCRL SNSVSHSTKK RKSNLGGYYY PLSLLGDISS GIVPGGGPNG FSTREAPSGV SRPPLVPTSR GRIRMLPSRF NDSVLDNWRK
101: DGKNGREGEV ERRKEKASSS LKSKQLEARA CVVVREREDE RVQREGFYGP ENFYSGDLVW AKSGRSEPFW PAIVIDPMVQ APELVLRSCI PDSACVVFFG
201: HSGNESERDY AWVRRGMIFP FLDYVARFQE QSELQGCSPG RFQMALEEAF LADQGFMEKL MDDIHTAAGN SSFDDSFHRW SHDLNNNAPS QASVSLPMSS
301: LYIGCETVIS FEMAKKMKAL TPGDQLLCKP CSRVKKSKHN CGICKRIGNH LDRQTWVKCD GCKVWVHVEC DKTSDKHLKG LGETDYYCPT CRAKFNFELS
401: DSEKPKLKLG KGDGGMVLPD KVIVVCSGVE GIYFPSLHLI VCKCGSCGPQ KKALSEWERH TGSKVRNWKT SVKVKSSKLP LEEWMMKLGE LHANATAANV
501: PKRPSIKQRK QKLRAFLSVH QECYGATNIH DFTSWVCKAC QKPSIKRDCC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASDEKMEP AVGILSIPSS
601: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HSLEKNGRQI TNMLSYCAYH RAPDPDTVLI MQTSKDVFSA KGLVQNKKQG GSRLISSIRR
701: DDKESPAEDT VTCDPFSAAR CRVYRRNTNT KKRSEEEAIP HHTRGPSHYP SAAIRTLNTF RHVPEEPKSF SSFRERLRHL QASTLWTEMD RVCFGRSGIH
801: GWGLFAKRII QDGEMVIEYR GEQVRGSIAD LREARYRREG KDCYLFKISE EVVVDATDKG NIARLINHSC TPNCYARIMS VGDGESRIVL IAKANIAVGE
901: ELTYDYLFDP DEPEEFKVPC LCKAPNCRKF MN

Best Arabidopsis Sequence Match ( AT4G27910.1 )
(BLAST)

0001: MIIKRKFKTQ IPSLERCKLG NESRKKKRKL NLGGGGYYYP LNLLGEIAAG IVPGNGRNGF SASWCTEVTK PVEVEESLSK RRSDSGTVRD SPPAEVSRPP
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN

Arabidopsis Description

ATX4Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UVA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.