Factsheet for Bra003056.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	6.36	85.19
Os01t0655300-01	Rice	cytosol, nucleus	5.81	80.77
CDY14381	Canola	nucleus	95.44	70.84
CDY35655	Canola	nucleus	94.33	70.02
AT5G53430.1	Thale cress	nucleus	81.47	56.47
Zm00001d044020_P001	Maize	cytosol	19.36	54.69
Bra040838.1-P	Field mustard	mitochondrion, nucleus	67.36	52.25
KRH64461	Soybean	nucleus	63.35	43.21
KRH53486	Soybean	nucleus	63.76	43.21
VIT_16s0098g00350.t01	Wine grape	nucleus	61.69	41.33
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	54.36	40.06
GSMUA_Achr2P06290_001	Banana	nucleus	51.87	39.52
GSMUA_Achr10P...	Banana	nucleus	50.76	37.64
GSMUA_Achr8P28030_001	Banana	nucleus	49.79	36.04
HORVU3Hr1G059080.11	Barley	cytosol, mitochondrion, nucleus, plastid	49.1	34.63
TraesCS3A01G237200.2	Wheat	nucleus	49.24	34.63
TraesCS3B01G265800.1	Wheat	nucleus	49.1	34.53
TraesCS3D01G237600.2	Wheat	nucleus	48.69	34.44
OQU87254	Sorghum	nucleus	41.91	34.16
Zm00001d011490_P003	Maize	nucleus	48.82	34.01
Bra003467.1-P	Field mustard	nucleus	42.6	29.76
Bra003396.1-P	Field mustard	cytosol	6.22	17.37
Bra007496.1-P	Field mustard	nucleus	8.16	17.15
Bra000343.1-P	Field mustard	cytosol	8.44	16.85
Bra021721.1-P	Field mustard	nucleus	21.99	16.53
Bra004809.1-P	Field mustard	nucleus	8.44	16.49
Bra010270.1-P	Field mustard	nucleus	9.54	13.97
Bra015723.1-P	Field mustard	nucleus	8.3	13.02
Bra033334.1-P	Field mustard	nucleus	11.34	12.85
Bra032592.1-P	Field mustard	nucleus	9.96	11.27
Bra032169.1-P	Field mustard	nucleus, plastid	12.17	9.7
Bra036300.1-P	Field mustard	nucleus	10.1	9.36
Bra027983.1-P	Field mustard	nucleus	12.45	6.94
Bra015678.1-P	Field mustard	nucleus	9.54	4.16

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra003056
EnsemblPlants:Bra003056.1	EnsemblPlants:Bra003056.1-P	InterPro:EPHD	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0009294	GO:GO:0009506	GO:GO:0009987	GO:GO:0016740
GO:GO:0032259	GO:GO:0046872	InterPro:IPR000313	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR013083
InterPro:IPR034732	UniProt:M4CFS4	PFAM:PF00855	PFAM:PF00856	PFAM:PF13832	PFscan:PS50280
PFscan:PS50812	PFscan:PS50868	PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF5	InterPro:PWWP_dom
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SUPFAM:SSF63748	SUPFAM:SSF82199
UniParc:UPI0002543AFC	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G53430 (E=9e-200) SDG29, SET29, ATX5 | SDG29 (SET DOMAIN GROUP 29); DNA binding / protein binding / zinc ion binding

Coordinates

chrA10:+:5627536..5632728

Molecular Weight (calculated)

82078.7 Da

IEP (calculated)

8.947

GRAVY (calculated)

-0.581

Length

723 amino acids

Sequence
(BLAST)

001: MIIKRKLKRM PSLKRRSNEE EEAPRGKKKR KVSYNYYPLS LLGEIGAGIV PGKLNGNNGF SALWCKEVSS PVEPDSKSKR IVIDPGRGRD RTAGVSRPPL
101: VRTSRGRVQV LPSRFNDSVL ENWRKDSGDE EREEEVEECR KERVKPKFIP RNHKYNSSAP CHDDDDEDGE MVRYSNDMRK HMSSSRTSTL EEARPKKEGV
201: YGPEDFYAGD LVWGKSGKNE PFWPAIIIDP MTQAPELVLR SCIPDAACVM FFGHSGTENE RDYAWVRRGM IFPFVDYVDR NPRACVGCGM VLSFKMAKKM
301: KALLPGDQLL CKPCSRMMKL AEFHANATAA KPPKRPSIKQ RKQRLLSFLR GGALKATDVE TLWVHVTCAW FQPEVCFASD EKMEPALGIL SIPSSNFVKI
401: CVICKQIHGS CTQCCKCSTY YHAMCASRAG YRMELHCLVK NGRQITKMVS YCAFHREPNP DTVLIIQTPS GVFSAKNLAQ NKKSTGSRLI LANREEVEEP
501: PPEEAVPVDP FSCARCRVFK RKVNSKKRSE EEGIPHHTGG PRHHPSAAIQ TLNAFRHVAE EPKSFSSFRE RLHHLQRTEM DRVCFGRSGI HGWGLFARRN
601: IQEGEMVLEY RGEQVRGIIA DLREARYRRE GKDCYLFKIS EEVVVDATEK GNIARLINHS CMPNCYARIM SVGDDESRIV LIAKATVPTG EELTYDYLFD
701: PDEPDEFKVP CLCKSANCRK FMN

Best Arabidopsis Sequence Match ( AT5G53430.1 )
(BLAST)

0001: MIIKRKLKTL KRCNSTNEED DIVRKKRKVN LNGGGSGGDY YYPLNLLGEI GAGIVPGKNG FSVSLCKQVS CSPKVEVVEE EEEEEEIKST RLVSRPPLVK
0101: TSRGRVQVLP SRFNDSVIEN WRKDNKSSGE EREEEIEEEA CRKEKVKVSS NHSLKIKQQE TKFTPRNYKY SSSSALCGEI DDEDKCEEIV RYGNSFEMKK
0201: QRYVDDEPRP KKEGVYGPED FYSGDLVWGK SGRNEPFWPA IVIDPMTQAP ELVLRSCIPD AACVMFFGHS GTENERDYAW VRRGMIFPFV DYVERLQEQS
0301: ELRGCNPRDF QMALEEALLA DQGFTEKLMQ DIHMAAGNQT FDDSVYRWVE EAAGSSQYLD HVAPSQDMKK YRNPRACVGC GMVLSFKMAQ KMKALIPGDQ
0401: LLCQPCSKLT KPKHVCGICK RIWNHLDSQS WVRCDGCKVW IHSACDQISH KHFKDLGETD YYCPTCRTKF DFELSDSEKP DSKSKLGKNN APMVLPDKVI
0501: VVCSGVEGIY FPSLHLVVCK CGSCGPERKA LSEWERHTGS KAKNWRTSVK VKSSKLPLEE WMMKLAEFHA NATAAKPPKR PSIKQRKQRL LSFLREKYEP
0601: VNVKWTTERC AVCRWVEDWD YNKIIICNRC QIAVHQECYG TRNVRDFTSW VCKACETPEI KRECCLCPVK GGALKPTDVE TLWVHVTCAW FQPEVCFASE
0701: EKMEPALGIL SIPSSNFVKI CVICKQIHGS CTQCCKCSTY YHAMCASRAG YRMELHCLEK NGRQITKMVS YCSYHRAPNP DTVLIIQTPS GVFSAKSLVQ
0801: NKKKSGTRLI LANREEIEES AAEDTIPIDP FSSARCRLYK RTVNSKKRTK EEGIPHYTGG LRHHPSAAIQ TLNAFRHVAE EPKSFSSFRE RLHHLQRTEM
0901: ERVCFGRSGI HGWGLFARRN IQEGEMVLEY RGEQVRGIIA DLREARYRRE GKDCYLFKIS EEVVVDATEK GNIARLINHS CMPNCYARIM SVGDDESRIV
1001: LIAKTTVASC EELTYDYLFD PDEPDEFKVP CLCKSPNCRK FMN

Arabidopsis Description

ATX5Histone-lysine N-methyltransferase ATX5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ42]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.