Factsheet for TraesCS3A01G237200.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G237600.2	Wheat	nucleus	98.35	98.92
TraesCS3B01G265800.1	Wheat	nucleus	98.83	98.83
HORVU3Hr1G059080.11	Barley	cytosol, mitochondrion, nucleus, plastid	95.53	95.8
Os01t0655300-01	Rice	cytosol, nucleus	4.57	90.38
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	4.18	79.63
OQU87254	Sorghum	nucleus	67.61	78.35
Zm00001d011490_P003	Maize	nucleus	77.24	76.49
Zm00001d044020_P001	Maize	cytosol	18.58	74.61
GSMUA_Achr2P06290_001	Banana	nucleus	54.57	59.11
GSMUA_Achr8P28030_001	Banana	nucleus	52.14	53.65
CDY29869	Canola	mitochondrion	48.05	51.62
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	48.35	50.66
AT4G27910.1	Thale cress	nucleus	50.58	50.63
CDX92851	Canola	mitochondrion	44.26	49.67
CDY35655	Canola	nucleus	46.98	49.59
CDY14381	Canola	nucleus	46.89	49.49
Bra040838.1-P	Field mustard	mitochondrion, nucleus	44.65	49.25
Bra003056.1-P	Field mustard	nucleus	34.63	49.24
KRH64461	Soybean	nucleus	50.49	48.96
AT5G53430.1	Thale cress	nucleus	49.32	48.61
KRH53486	Soybean	nucleus	50.39	48.55
VIT_16s0098g00350.t01	Wine grape	nucleus	50.39	48.01
VIT_15s0046g00760.t01	Wine grape	nucleus	48.35	47.7
KRH47912	Soybean	nucleus	45.82	47.62
TraesCS3A01G143300.2	Wheat	plastid	45.82	47.34
PGSC0003DMT400023546	Potato	nucleus	32.3	47.16
KRH06474	Soybean	nucleus	45.23	47.11
Solyc01g095890.2.1	Tomato	nucleus	46.21	45.32
CDY25072	Canola	nucleus	42.02	44.22
CDX67860	Canola	nucleus	41.05	43.78
KRH68208	Soybean	nucleus	41.15	43.03
AT3G61740.1	Thale cress	nucleus	42.41	42.83
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	40.37	42.09
Bra003467.1-P	Field mustard	nucleus	38.62	38.36
TraesCS5A01G165200.1	Wheat	plastid	21.3	20.17
TraesCS7A01G453700.1	Wheat	nucleus	6.23	18.93
TraesCS5A01G179900.1	Wheat	nucleus	6.42	18.23
TraesCS7A01G128600.1	Wheat	nucleus	9.34	11.98
TraesCS7A01G128300.1	Wheat	nucleus	10.31	11.95
TraesCS6A01G219600.1	Wheat	nucleus	8.75	11.73
TraesCS2A01G302100.1	Wheat	nucleus	5.64	11.55
TraesCS4A01G121300.4	Wheat	mitochondrion	8.27	8.78
TraesCS5A01G042700.1	Wheat	nucleus, plastid	10.6	8.42
TraesCS5A01G357600.1	Wheat	plastid	14.49	7.71
TraesCS2A01G005000.1	Wheat	nucleus	8.56	4.86
TraesCS5A01G357700.1	Wheat	mitochondrion	0.1	1.25

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10	ncoils:Coil
InterPro:EPHD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Hist-Lys_N-MeTrfase_ATX	InterPro:IPR000313
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR025780	InterPro:IPR034732
PFAM:PF00855	PFAM:PF00856	PFAM:PF13831	PFAM:PF13832	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS50280	PFscan:PS50812	PFscan:PS50868	PFscan:PS51566	PFscan:PS51805	PANTHER:PTHR13793
PANTHER:PTHR13793:SF5	InterPro:PWWP_dom	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00317
SUPFAM:SSF57903	SUPFAM:SSF63748	SUPFAM:SSF82199	EnsemblPlantsGene:TraesCS3A01G237200	EnsemblPlants:TraesCS3A01G237200.2	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	TIGR:cd15495	TIGR:cd15517
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:443420475..443428360

Molecular Weight (calculated)

117100.0 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.578

Length

1028 amino acids

Sequence
(BLAST)

0001: MIFKRTQRSE ILSLKRCNAE GEGGAGERRP KRQRGDDFFP VELLGHVPAS GIPYAAAGFR WCEEPEVASP AGAAPAPAAA AATRPPVVRT SRGRAQVLPS
0101: RFNDSVLIDP WKKEKPAKPP APPKVEQLVP KSKPLCRKGA ILDRTSALSE VDEDEEAQRY RVCQNFVASR KYSMSLSALT SLHNEPYSGY HRNESMEDEE
0201: EESEEDLQAQ KEDLHWSTEF LYGDIVWARL GKRQPAWPGV VVDPARQAAA DAMPPQPRGG AVLCVMLFGW RAEFSDEKKY VWVRQGGIFP FVDYIDQFQG
0301: QTDLSSLKPG DFQRALEEAF LADQGFSEVP MDDSTAGQPV VCQSCPDELE EVTGSNELEC QAQIKHYTSE LQCESCGNCF PNKESNKLVY VMEQLACKHC
0401: ARILRSKEYC GICLKSWQHK CDRRWVCCHG CESWIHAECD KKCSNLKDLR DKSYFCLYCR VKRNSNLSSK KTNSPDDSKD NSAQKGRKPD RVGVICFDME
0501: GTYLPNLELI SCHCAPCKGQ KFLFNEWERH AGCRSKNWKS SIKMKGTLMP FGKWIDQHQP SVCSTYPSKR SSQKLKKQQL LDLLNEPYDH VQVKWTTERC
0601: AVCRWVEDWD YNKIVICNRC QIAVHQECYG VSGKQDFTSW ICRACETPEQ KRDCCLCPVK GGALKPTNVD NLWVHVACAW FQPQVAFASD ELMEPAIGIL
0701: SMAPLLFMKM CVICRQIHGA CTQCYRCSTY YHATCASRAG YRMELHCLEK NGKQTTKMIS YCAHHRRPNP DNVLIIQTPA GTFSSKRLVQ SSGTIAASRL
0801: IRKDLPKDSA SEVETIENLC SARCRVYVRK ELKRSREAAM AHRVRGYCQH RWDEIDSLNP RREERDPESF STFKERLHYL QKTEHSRVCF GRSGIHRWGL
0901: FARRDIQEGE MVLEYRGEQV RRSVADLREA QYRVQGKDCY LFKISEEVVV DATDKGNVAR LINHSCTPNF YARIMSVGHD QSRIVLIAKR NVCAGEELTY
1001: DYLFDPDEAD DCKVPCLCQT ADCRKFMN

Best Arabidopsis Sequence Match ( AT4G27910.1 )
(BLAST)

0001: MIIKRKFKTQ IPSLERCKLG NESRKKKRKL NLGGGGYYYP LNLLGEIAAG IVPGNGRNGF SASWCTEVTK PVEVEESLSK RRSDSGTVRD SPPAEVSRPP
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN

Arabidopsis Description

ATX4Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UVA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.