Factsheet for TraesCS6A01G219600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G202600.1	Wheat	nucleus	96.35	96.85
TraesCS6B01G249100.1	Wheat	nucleus	93.35	95.98
Zm00001d051057_P002	Maize	nucleus	44.07	71.61
KXG30618	Sorghum	nucleus	51.76	67.63
Solyc07g006060.2.1	Tomato	nucleus	21.25	66.26
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	14.21	57.98
GSMUA_Achr7P16220_001	Banana	nucleus	36.11	55.4
VIT_11s0037g00880.t01	Wine grape	nucleus	33.9	52.63
CDY36467	Canola	nucleus	32.72	50.71
Bra010270.1-P	Field mustard	nucleus	32.46	50.4
CDY23260	Canola	nucleus	32.46	50.4
AT4G30860.1	Thale cress	nucleus	32.46	50.1
GSMUA_Achr6P30890_001	Banana	mitochondrion	33.12	47.3
KRH54981	Soybean	plastid	31.94	46.58
TraesCS7A01G453700.1	Wheat	nucleus	15.91	36.09
TraesCS5A01G179900.1	Wheat	nucleus	16.43	34.81
TraesCS2A01G302100.1	Wheat	nucleus	11.47	17.53
TraesCS7A01G128600.1	Wheat	nucleus	10.17	9.74
TraesCS3A01G143300.2	Wheat	plastid	12.52	9.65
TraesCS7A01G128300.1	Wheat	nucleus	10.43	9.02
TraesCS3A01G237200.2	Wheat	nucleus	11.73	8.75
TraesCS4A01G121300.4	Wheat	mitochondrion	10.95	8.68
TraesCS2A01G005000.1	Wheat	nucleus	17.34	7.35
TraesCS5A01G042700.1	Wheat	nucleus, plastid	12.26	7.26
TraesCS5A01G165200.1	Wheat	plastid	9.91	7.0
TraesCS5A01G357700.1	Wheat	mitochondrion	0.52	5.0
TraesCS5A01G357600.1	Wheat	plastid	11.99	4.76

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10	InterPro:AWS_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214
InterPro:IPR001841	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083	InterPro:IPR025787	PFAM:PF00856
ScanProsite:PS01359	PFscan:PS50089	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578
PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00317
SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	EnsemblPlantsGene:TraesCS6A01G219600	EnsemblPlants:TraesCS6A01G219600.1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_PHD	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr6A:-:407088102..407098597

Molecular Weight (calculated)

82572.3 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.240

Length

767 amino acids

Sequence
(BLAST)

001: MPDLSTVCPE LSADAAVDLL GGDAAADPAT AAAAAAATES SSGGDGAPII PVECRWSGRV RAFDVQGAVP VTACPEARRG GERKSSFVPP PSSAAASLAP
101: VSGRVLEDYV NEGVIAVTAG AVARRGGGRK NSFSAPLPPS AAAPAPASGR ALEGYVDADL ASLTASPEAQ HGGGKESSAP LHSAATAAHA PAPGVKLEDY
201: VNECAVSVTA YPEARRGGGK KPSSALLPSA VALLPALAPA PDLMLEDYVS KGVVSVTAHP EVRRGSGKRS SSARSPLSPA ATVLALASGR SLKDYVKEWV
301: ARKVASGASP QHCVLPFLNG APKAVECRVC YKIIHPLEEI KCSVSRCEQM FHLTCVVEYI ANFTPESFRC PQHGCMVCKQ KMFFWRCGRC TVAAHTKCAP
401: WPLIHLKDDQ GSAICWRHPS NWLLQNENAD LTNNIEEVFC RLPLPYVNEE FNIDSTIRNF TAIVCKPPSY THIRRNVYLV KKKRADSSAE TGCTNCKSDS
501: VCKDDCECRG LSMSCSKSCH CSDLCSNKPF RKDKKIKIVK SEGCGWGAVA LEPLEKGDFI IEYVGEVIND ATCEQRLWDM KRRGDKNFYM CEISKDFTID
601: ATFKGNTSRF LNHSCDPNCK LEKWQVEGET RVGVFASRFI EVGEPLTYDY RFVHFGEKVK CHCGAKSCQG YLGSQLKNPT QNALAAAALE NNKLLVQQGG
701: CSPSRVKTET RLLPWTNCIE VPFNLRSKTK IDRICWGHKR QRTSLLDPSS SSASVQPSDI EAGAFIL

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.