CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051057_P002	Maize	nucleus	72.23	89.83
Solyc07g006060.2.1	Tomato	nucleus	26.58	63.41
GSMUA_Achr7P16220_001	Banana	nucleus	47.87	56.2
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	17.89	55.85
TraesCS6B01G249100.1	Wheat	nucleus	67.97	53.49
TraesCS6D01G202600.1	Wheat	nucleus	68.14	52.42
TraesCS6A01G219600.1	Wheat	nucleus	67.63	51.76
OQU80550	Sorghum	nucleus	27.43	49.69
VIT_11s0037g00880.t01	Wine grape	nucleus	41.57	49.39
GSMUA_Achr6P30890_001	Banana	mitochondrion	44.29	48.42
CDY23260	Canola	nucleus	40.72	48.38
CDY36467	Canola	nucleus	40.72	48.28
Bra010270.1-P	Field mustard	nucleus	40.55	48.18
AT4G30860.1	Thale cress	nucleus	39.18	46.28
KRH54981	Soybean	plastid	40.03	44.68
OQU89246	Sorghum	nucleus	20.1	31.64
EES10812	Sorghum	nucleus	15.33	17.27
OQU87254	Sorghum	nucleus	13.8	9.13
KXG31547	Sorghum	cytosol, nucleus, plastid	14.65	8.87
KXG22920	Sorghum	nucleus	16.35	8.45
KXG40039	Sorghum	nucleus	12.1	7.9
EER89265	Sorghum	plastid	12.44	7.82
EER96448	Sorghum	nucleus	11.93	6.86
OQU85110	Sorghum	nucleus	19.76	6.09
KXG36166	Sorghum	nucleus, plastid	14.65	4.51

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10	UniProt:A0A194YQV9	InterPro:AWS_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259
GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083
InterPro:IPR025787	EnsemblPlants:KXG30618	ProteinID:KXG30618	ProteinID:KXG30618.1	PFAM:PF00856	ScanProsite:PS01359
PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884	PANTHER:PTHR22884:SF455
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00317	SMART:SM00508	EnsemblPlantsGene:SORBI_3004G212000
SUPFAM:SSF82199	UniParc:UPI0007F27B9F	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:56154862..56168756

Molecular Weight (calculated)

64972.6 Da

IEP (calculated)

8.346

GRAVY (calculated)

-0.306

Length

587 amino acids

Sequence
(BLAST)

001: MPDLSTGYLP PFPEFSLDAG TLTVDHAEDA AAAAADSAPA YASSSATVGG GGSVDLIIPA ECRWRSRVRT FDVAGADTGA VTACPAARRG GGKNLSLIPS
101: LEPARTQSSA SAPTLEERVS EWAAKKAAAG VPAHHCVLPF LTGAPKAVEC RSCSKIIYAG EEIKCSVKKC LLMFHLSCVV KDTSNFTAES FRCPQHGCMV
201: CKQKMFFWRC GRCTVAAHTK CAPWPVVHLK DNQGSAICWR HTSDWLLQNE SADFTNSIEE VFCRLPLPYV NEDLNIESTL AEYAQAVYKP PPYTSIRRNV
301: YLIKKKRTSV RVDIGCTNCR ADSTCKEDCE CRGISTSCSK NCRCSDLCTN RPFRKDKKIK IVKTKRCGWG AVALEPLERG DFVIEYVGEV IDDATCEQRL
401: WDIRYRGDKN FYMCEISKDF TIDATFKGNV SRFLNHSCEP NCKLEKWQVD GETRVGVFAS RSIKVGEPLT YDYRFVHFGE KVKCHCEAVN CQGYLGSQIK
501: NPIQSIIASA TSQGQLREVS STQQEASRLK PIKHLLPWTN CIEVSFNLRS KRKISRLCWA HKKKRTSLEA SSTSMPTSMS EVPAADI

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.