Factsheet for Bra015200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002667.1-P
Bra020379.1-P
Bra023594.1-P
Bra023933.1-P
Bra030515.1-P
Bra032169.1-P
Bra033358.1-P
Bra036300.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	Bra030515.1-P	AT1G02930.1	23778966
AT5G51230.1	Bra033358.1-P	AT1G02930.1	23778966
AT5G51230.1	Bra023594.1-P	AT1G30530.1	23778966
AT5G51230.1	Bra032169.1-P	AT2G23380.1	15456723
AT5G51230.1	Bra023933.1-P	AT3G20740.1	23778966
AT5G51230.1	Bra036300.1-P	AT4G02020.1	15456723
AT5G51230.1	Bra036300.1-P	AT4G02020.1	23778966
AT5G51230.1	Bra002667.1-P	AT5G58230.1	23778966
AT5G51230.1	Bra020379.1-P	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00460	Canola	nucleus, plastid	100.0	100.0
CDX99960	Canola	nucleus	95.73	95.73
AT5G51230.1	Thale cress	nucleus	89.56	89.7
Bra022541.1-P	Field mustard	nucleus	81.8	81.8
TraesCSU01G224600.1	Wheat	nucleus	13.92	70.97
TraesCSU01G194400.1	Wheat	nucleus	13.92	70.97
GSMUA_Achr2P11140_001	Banana	cytosol	11.39	64.86
VIT_16s0013g00860.t01	Wine grape	nucleus	63.61	60.73
Solyc03g093640.2.1	Tomato	nucleus	59.18	58.62
KRH33365	Soybean	nucleus	54.11	56.25
Bra015201.1-P	Field mustard	cytosol	30.54	56.1
KRG90126	Soybean	nucleus	53.32	55.43
Os09t0306800-01	Rice	cytosol, nucleus	47.63	49.67
KXG37542	Sorghum	nucleus	47.15	49.58
TraesCS2B01G023900.1	Wheat	cytosol	45.73	48.17
HORVU5Hr1G054730.1	Barley	nucleus	48.42	48.04
TraesCS2A01G000100.1	Wheat	nucleus	45.73	47.85
OQU89244	Sorghum	nucleus	47.47	47.85
TraesCS5A01G179600.1	Wheat	nucleus	48.26	47.81
TraesCS5D01G184200.2	Wheat	nucleus	48.26	47.81
TraesCS2D01G000600.1	Wheat	cytosol	45.57	47.76
HORVU2Hr1G000010.32	Barley	nucleus	45.41	47.36
TraesCS5B01G177400.2	Wheat	nucleus	48.1	46.27
Zm00001d034036_P003	Maize	golgi	44.3	45.98
Zm00001d020036_P002	Maize	nucleus	47.15	43.5
Os04t0162100-01	Rice	nucleus	40.82	41.35
TraesCS2A01G002500.1	Wheat	nucleus	41.61	40.59
TraesCS2B01G020400.3	Wheat	nucleus	40.98	40.34
KXG25810	Sorghum	nucleus	36.87	38.45
HORVU2Hr1G000390.20	Barley	nucleus	40.19	38.43
Bra021078.1-P	Field mustard	nucleus	25.63	38.12
TraesCS3B01G073800.1	Wheat	nucleus	14.72	36.33
TraesCS4D01G183300.1	Wheat	nucleus	7.12	35.16
TraesCS5D01G388900.1	Wheat	nucleus	6.8	33.59
Bra029179.1-P	Field mustard	nucleus	42.72	31.25
Bra005316.1-P	Field mustard	nucleus	9.65	25.74
Bra040097.1-P	Field mustard	nucleus	18.35	24.95
KRH34601	Soybean	nucleus	30.06	24.23
Bra005262.1-P	Field mustard	mitochondrion	12.03	19.9

Protein Annotations

EnsemblPlants:Bra015200.1	EnsemblPlants:Bra015200.1-P	EnsemblPlantsGene:Bra015200	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0
PFAM:PF09733	SEG:seg	UniParc:UPI0002544660	UniProt:M4DFC8	MapMan:12.3.3.1.1.3	MapMan:15.5.15

Description

AT5G51230 (E=4e-290) EMF2, VEF2, CYR1 | EMF2 (EMBRYONIC FLOWER 2); DNA binding / transcription factor

Coordinates

chrA10:-:3603613..3608402

Molecular Weight (calculated)

71597.8 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.336

Length

632 amino acids

Sequence
(BLAST)

001: MPGIPLVSPA ASSCSRSTDS MCHEDSRVLM SEEEEIAAEE SLVAYCKPVE LYNILQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG TIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYKFSRAC ILTGVVGVDG VSQAQANFLL PDMNKLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: VSLQSLYSLW QKSPNMDLGQ KVDSVSLVEM QPCFIKLKSM NEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGATEKSPY SSFSYDDISS PSMLQIIRLR
301: TRNVVFNYRY YNNKLQRTEV TEDFSCPFCL VKCASLKGLK YHLPSTHDLF NFEFWVSEEY QAVNVSLKSE TMISEINEDG VDPKQQTFFF SSKKGRRRRQ
401: KSQVRSSRQG HHLGLGCQVL DKTDDAHSVR CEKNRIAPGK HCERIGVAES SGQRVPPGTS PADVQSCVDP DSVQSMVGST MLQFAKTRKL SIERSELRNR
501: SLLQKREFFH SHRAQPMALE QVLSDRDSED EVDDDVADFE DRRMLDDFVD VTKDEKQMMH MWNSFVRKQR VLADGHIPWA CEAFSRLHGS IMVRIPHLIW
601: CWRMFMVKLW NHGLLDARTM NNCNVFLEQL PN

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.