Factsheet for Zm00001d034036_P003

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006683_P001
Zm00001d013702_P001
Zm00001d024698_P002
Zm00001d028890_P002
Zm00001d033247_P001
Zm00001d033248_P002
Zm00001d033252_P001
Zm00001d036296_P004
Zm00001d045055_P001
Zm00001d047636_P002
Zm00001d049608_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	Zm00001d028890_P002	AT1G02580.1	15456723
AT2G35670.1	Zm00001d047636_P002	AT1G02580.1	15456723
AT2G35670.1	Zm00001d028890_P002	AT1G02580.1	16924116
AT2G35670.1	Zm00001d047636_P002	AT1G02580.1	16924116
AT2G35670.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT2G35670.1	Zm00001d036296_P004	AT2G23380.1	16924116
AT2G35670.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT2G35670.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT2G35670.1	Zm00001d028890_P002	AT4G02020.1	16924116
AT2G35670.1	Zm00001d047636_P002	AT4G02020.1	16924116
AT4G16845.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT4G16845.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT4G16845.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d006683_P001	AT1G30530.1	23778966
AT5G51230.1	Zm00001d045055_P001	AT1G30530.1	23778966
AT5G51230.1	Zm00001d036296_P004	AT2G23380.1	15456723
AT5G51230.1	Zm00001d024698_P002	AT3G20740.1	23778966
AT5G51230.1	Zm00001d049608_P001	AT3G20740.1	23778966
AT5G51230.1	Zm00001d028890_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d047636_P002	AT4G02020.1	15456723
AT5G51230.1	Zm00001d028890_P002	AT4G02020.1	23778966
AT5G51230.1	Zm00001d047636_P002	AT4G02020.1	23778966
AT5G51230.1	Zm00001d013702_P001	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033247_P001	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033248_P002	AT5G58230.1	23778966
AT5G51230.1	Zm00001d033252_P001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	15.6	76.61
Os09t0306800-01	Rice	cytosol, nucleus	74.06	74.42
TraesCS5A01G179600.1	Wheat	nucleus	73.73	70.38
TraesCS5D01G184200.2	Wheat	nucleus	73.73	70.38
HORVU5Hr1G054730.1	Barley	nucleus	73.4	70.17
TraesCS2D01G000600.1	Wheat	cytosol	68.47	69.15
TraesCS2A01G000100.1	Wheat	nucleus	67.98	68.54
TraesCS2B01G023900.1	Wheat	cytosol	67.49	68.5
TraesCS5B01G177400.2	Wheat	nucleus	73.89	68.49
HORVU2Hr1G000010.32	Barley	nucleus	67.98	68.32
Zm00001d020036_P002	Maize	nucleus	74.71	66.42
TraesCSU01G075500.1	Wheat	nucleus	31.86	60.81
VIT_02s0234g00050.t01	Wine grape	nucleus	32.02	51.72
TraesCS3B01G073800.1	Wheat	nucleus	21.35	50.78
GSMUA_Achr4P29640_001	Banana	nucleus	52.71	48.49
KRH28171	Soybean	nucleus	32.84	47.06
VIT_16s0013g00860.t01	Wine grape	nucleus	51.07	46.98
Solyc03g093640.2.1	Tomato	nucleus	48.77	46.55
KRH77315	Soybean	nucleus	32.35	46.03
AT5G51230.1	Thale cress	nucleus	46.8	45.17
GSMUA_Achr2P11170_001	Banana	nucleus	50.9	44.93
CDX91573	Canola	nucleus	46.31	44.76
CDY16330	Canola	nucleus	46.14	44.46
Bra022541.1-P	Field mustard	nucleus	46.14	44.46
CDY00460	Canola	nucleus, plastid	45.98	44.3
CDX99960	Canola	nucleus	45.98	44.3
Bra015200.1-P	Field mustard	nucleus, plastid	45.98	44.3
CDY00458	Canola	cytosol	23.97	42.44
KRH33365	Soybean	nucleus	42.36	42.43
Bra015201.1-P	Field mustard	cytosol	23.81	42.15
KRG90126	Soybean	nucleus	41.87	41.94
CDY43476	Canola	nucleus	10.18	41.61
CDY71414	Canola	nucleus	24.96	37.81
CDX76587	Canola	nucleus	24.79	35.7
Bra021078.1-P	Field mustard	nucleus	24.63	35.29
AT4G16845.1	Thale cress	nucleus	25.12	34.77
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	12.15	31.9
CDX84180	Canola	cytosol	9.36	26.03
Bra005316.1-P	Field mustard	nucleus	9.69	24.89
CDY42943	Canola	nucleus	18.23	23.87
Bra040097.1-P	Field mustard	nucleus	18.23	23.87
CDY35632	Canola	cytosol	17.41	23.45
TraesCS4D01G183300.1	Wheat	nucleus	4.93	23.44
TraesCS5D01G388900.1	Wheat	nucleus	4.76	22.66
CDY33160	Canola	nucleus	16.09	21.3
CDY31712	Canola	nucleus	11.66	20.34
CDX75032	Canola	mitochondrion, nucleus	12.64	20.16
Bra005262.1-P	Field mustard	mitochondrion	12.64	20.16
KRH34601	Soybean	nucleus	25.45	19.77
CDY38857	Canola	nucleus	22.0	18.01
Bra029179.1-P	Field mustard	nucleus	25.45	17.94
CDX84179	Canola	cytosol	11.99	17.89
AT4G16810.1	Thale cress	nucleus	8.21	16.67
AT2G35670.1	Thale cress	nucleus	16.75	13.51

Protein Annotations

EnsemblPlants:Zm00001d034036_P003	EnsemblPlants:Zm00001d034036_T003	EnsemblPlantsGene:Zm00001d034036	EntrezGene:100274131	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597
PANTHER:PTHR22597:SF0	PFAM:PF09733	ProteinID:ONM09369.1	SEG:seg	UniParc:UPI00084444C2	UniProt:A0A1D6L4S5
MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:	:	:

Description

Polycomb group protein EMBRYONIC FLOWER 2

Coordinates

chr1:+:281961010..281971333

Molecular Weight (calculated)

69079.3 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.338

Length

609 amino acids

Sequence
(BLAST)

001: MSNLLQKKVL PCIASQLNCT ILSRGELLKI CYEIPIIIIL YIWQPPFVQR SLLYKIQARR KKRIQITVSL SASTNTQAQN IFPLYVLLAR PTSNISLEGH
101: SPIYRFSRAC LLTNFSEFGN KDKTEATFII PDVKNLSTSR ACNLNIIFIS RGQVGQIIGE DSCSGNDVEG SSLQKLEGKC SWGKMPTNLL APSLEKCVTL
201: STGNAVDLTS TVTMNPSFLE PKFLEQDSCL TFCSHKVDAT GSYQLQVCIS AEEAGARELL LSPYYCNYSY NNVPPSLLPE IISNFVLHRL RAGNVLFNYK
301: YYNNTMQKTE VTEDFSCPFC LVPCGSFKGL GCHLNSSHDL FHYELWISEE CQAVNVSLKA DAWKTEFVAE GVDPRHQTFS YCSRFKKRRR LETTAEKFRH
401: VHPHIMESGS HEDAQAGSED DYVQRENGLS VANTSVDPSQ PVHGSNLSPP TVLQFGKSRK LSAERSDPRN RQLLQKRQFF HSHRAQPMPL EQVLSDHDSE
501: DEVDDDIADF EDRRMLDDFV DVTKDEKLIM HMWNSFVRKQ RVLADGHIPW ACEAFSRCHG QQLVQNPALL WGWRFFMIKL WNHSLLDARA MNACNTILQG
601: YQDGSADPK

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.