Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P11140_001 | Banana | cytosol | 12.33 | 33.33 |
| TraesCSU01G224600.1 | Wheat | nucleus | 13.67 | 33.06 |
| TraesCSU01G194400.1 | Wheat | nucleus | 13.67 | 33.06 |
| AT4G16845.1 | Thale cress | nucleus | 26.33 | 17.95 |
| Bra015201.1-P | Field mustard | cytosol | 17.0 | 14.83 |
| CDY00458 | Canola | cytosol | 17.0 | 14.83 |
| AT2G35670.1 | Thale cress | nucleus | 22.67 | 9.01 |
| AT5G51230.1 | Thale cress | nucleus | 18.67 | 8.87 |
| KXG37542 | Sorghum | nucleus | 17.33 | 8.65 |
| HORVU5Hr1G054730.1 | Barley | nucleus | 18.0 | 8.48 |
| TraesCS5D01G184200.2 | Wheat | nucleus | 18.0 | 8.46 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 18.0 | 8.46 |
| OQU89244 | Sorghum | nucleus | 17.67 | 8.45 |
| Os09t0306800-01 | Rice | cytosol, nucleus | 17.0 | 8.42 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 16.67 | 8.33 |
| TraesCS2D01G000600.1 | Wheat | cytosol | 16.67 | 8.29 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 16.67 | 8.28 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 18.0 | 8.22 |
| Zm00001d034036_P003 | Maize | golgi | 16.67 | 8.21 |
| HORVU2Hr1G000010.32 | Barley | nucleus | 16.33 | 8.09 |
| Os04t0162100-01 | Rice | nucleus | 16.33 | 7.85 |
| Zm00001d020036_P002 | Maize | nucleus | 17.67 | 7.74 |
| KXG25810 | Sorghum | nucleus | 15.33 | 7.59 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 14.33 | 6.51 |
| TraesCS2A01G002500.1 | Wheat | nucleus | 14.0 | 6.48 |
| TraesCS2B01G020400.3 | Wheat | nucleus | 13.33 | 6.23 |
| TraesCS5D01G388900.1 | Wheat | nucleus | 1.67 | 3.91 |
| TraesCS4D01G183300.1 | Wheat | nucleus | 1.33 | 3.12 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 1.0 | 1.17 |
Protein Annotations
| MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | EntrezGene:827387 | ProteinID:AEE83807.1 | ArrayExpress:AT4G16810 | EnsemblPlantsGene:AT4G16810 |
| RefSeq:AT4G16810 | TAIR:AT4G16810 | RefSeq:AT4G16810-TAIR-G | EnsemblPlants:AT4G16810.1 | TAIR:AT4G16810.1 | Unigene:At.54365 |
| UniProt:B3H7I2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0031490 | RefSeq:NP_193414.2 |
| PFAM:PF09733 | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF8 | InterPro:Polycomb_protein_VEFS-Box | UniParc:UPI000173940B | SEG:seg |
Description
VEFS-Box of polycomb protein [Source:UniProtKB/TrEMBL;Acc:B3H7I2]
Coordinates
chr4:-:9459870..9462253
Molecular Weight (calculated)
33692.0 Da
IEP (calculated)
6.110
GRAVY (calculated)
-0.879
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIKLTTEA KVPAKRSKAT SHYLPLHKRQ FYHSRTGQPL SLEQVMSDRD SENDVDKNDD AAHLEESQML NGSMDENEIV AERFIKLWNS FVKQQRIVAD
101: AHIPWACEAF SRLHLQELRS NLSLDLCWRQ FMIKQWDYGL LDRVTMNKCN TIIYHNISTT NDDINNNNTR TTDNMDVVDD DINRDKGNTE TTETAPVATE
201: ATTHGEQDGI DVGEQGNNGS TLCEQMESAT VTESSQDATW STSTQRSFGK RPIVPTPKMI EWQWSSVGGR RSGGRRGRGR RGRGGRGREG GSASGSGNLI
101: AHIPWACEAF SRLHLQELRS NLSLDLCWRQ FMIKQWDYGL LDRVTMNKCN TIIYHNISTT NDDINNNNTR TTDNMDVVDD DINRDKGNTE TTETAPVATE
201: ATTHGEQDGI DVGEQGNNGS TLCEQMESAT VTESSQDATW STSTQRSFGK RPIVPTPKMI EWQWSSVGGR RSGGRRGRGR RGRGGRGREG GSASGSGNLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.