Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G020400.3 | Wheat | nucleus | 93.52 | 94.39 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 82.1 | 80.48 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 12.04 | 62.9 |
| TraesCS5A01G179600.1 | Wheat | nucleus | 53.7 | 54.55 |
| TraesCS2A01G000100.1 | Wheat | nucleus | 49.85 | 53.48 |
| Os04t0162100-01 | Rice | nucleus | 49.07 | 50.96 |
| KXG25810 | Sorghum | nucleus | 43.52 | 46.53 |
| CDY43476 | Canola | nucleus | 10.34 | 44.97 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 44.44 | 43.5 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 43.67 | 42.75 |
| AT5G51230.1 | Thale cress | nucleus | 41.51 | 42.63 |
| CDX91573 | Canola | nucleus | 41.05 | 42.22 |
| KRH28171 | Soybean | nucleus | 27.62 | 42.12 |
| Bra022541.1-P | Field mustard | nucleus | 41.05 | 42.09 |
| CDY16330 | Canola | nucleus | 41.05 | 42.09 |
| KRH77315 | Soybean | nucleus | 27.78 | 42.06 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 40.59 | 41.61 |
| CDX99960 | Canola | nucleus | 40.59 | 41.61 |
| CDY00460 | Canola | nucleus, plastid | 40.59 | 41.61 |
| Solyc03g093640.2.1 | Tomato | nucleus | 40.74 | 41.38 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 43.98 | 41.3 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 23.77 | 40.85 |
| KRH33365 | Soybean | nucleus | 35.49 | 37.83 |
| KRG90126 | Soybean | nucleus | 35.34 | 37.66 |
| Bra015201.1-P | Field mustard | cytosol | 17.9 | 33.72 |
| CDY00458 | Canola | cytosol | 17.9 | 33.72 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 12.04 | 33.62 |
| CDY71414 | Canola | nucleus | 19.14 | 30.85 |
| AT4G16845.1 | Thale cress | nucleus | 20.06 | 29.55 |
| CDX76587 | Canola | nucleus | 19.14 | 29.31 |
| Bra021078.1-P | Field mustard | nucleus | 18.83 | 28.71 |
| CDX84180 | Canola | cytosol | 8.8 | 26.03 |
| Bra005316.1-P | Field mustard | nucleus | 9.41 | 25.74 |
| CDY33160 | Canola | nucleus | 14.66 | 20.65 |
| Bra040097.1-P | Field mustard | nucleus | 14.66 | 20.43 |
| CDY42943 | Canola | nucleus | 14.66 | 20.43 |
| CDY35632 | Canola | cytosol | 14.2 | 20.35 |
| CDY31712 | Canola | nucleus | 10.8 | 20.06 |
| CDY38857 | Canola | nucleus | 22.69 | 19.76 |
| KRH34601 | Soybean | nucleus | 22.53 | 18.62 |
| Bra029179.1-P | Field mustard | nucleus | 24.23 | 18.17 |
| CDX75032 | Canola | mitochondrion, nucleus | 10.65 | 18.06 |
| Bra005262.1-P | Field mustard | mitochondrion | 10.65 | 18.06 |
| CDX84179 | Canola | cytosol | 10.96 | 17.4 |
| AT4G16810.1 | Thale cress | nucleus | 6.48 | 14.0 |
| AT2G35670.1 | Thale cress | nucleus | 14.04 | 12.05 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G002500.1 | EnsemblPlantsGene:TraesCS2A01G002500 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:1370612..1379849
Molecular Weight (calculated)
73159.7 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.504
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLMSLGLY GVPCEFCWNN GFSYPRSTEQ TCGQKSRAQL SPDDELSAKE SLALYCKPVE LYNIIRQRAI KKPPSLQRCL RYKIEAKRKK RIQISVSISG
101: STNTRLPAHG IFPLHVLLAR SSNDAPGEGH SPMYRFSRAC VLTSFCESGD SGHTEATFTI PNMKSLSTSQ VRSLDIILIS RGQGGQNLSE NCSENHAEYS
201: SPQKLGGQCF WGKIPIDSLG SSLDSVTLSL GHTVELTSEI SMNPGFIEPS LLEHDSCLTF CSLKANATGS YKLKASIDVQ EAGARDMRLS PYNIYSYDDV
301: PQSLLPKIIR LRTGNVLFNY KYYKNLYKSE VTEDFTCSFC LVPCGSFKGL ECHLTSSHDL FRYEFWVSKE YQAVNVSLKI DTRREELLTV AGNDPGSRVF
401: FYRSSRFKRC KISETTTDKT KDVYPHITEL GSAGMTVPVD QDIVEPRSPR NTVPPPAQTT ESGSSKDAQD GSVVDYVPKE NGINVPERTA LQSDRARKLL
501: VDLDDPSHAL LKKREFFHSQ KAQRMELDVL YSDHDSEDEL DHDIADFEDR TLLGGFSDVA EEEKRIMHMW NSFKRRQRIL ADGHVPWACE AFTHQHGQEL
601: VQNPRLRWCW RVLMIKLWNH GLLNGRTMNI CNKHLEVLES QRADPKQS
101: STNTRLPAHG IFPLHVLLAR SSNDAPGEGH SPMYRFSRAC VLTSFCESGD SGHTEATFTI PNMKSLSTSQ VRSLDIILIS RGQGGQNLSE NCSENHAEYS
201: SPQKLGGQCF WGKIPIDSLG SSLDSVTLSL GHTVELTSEI SMNPGFIEPS LLEHDSCLTF CSLKANATGS YKLKASIDVQ EAGARDMRLS PYNIYSYDDV
301: PQSLLPKIIR LRTGNVLFNY KYYKNLYKSE VTEDFTCSFC LVPCGSFKGL ECHLTSSHDL FRYEFWVSKE YQAVNVSLKI DTRREELLTV AGNDPGSRVF
401: FYRSSRFKRC KISETTTDKT KDVYPHITEL GSAGMTVPVD QDIVEPRSPR NTVPPPAQTT ESGSSKDAQD GSVVDYVPKE NGINVPERTA LQSDRARKLL
501: VDLDDPSHAL LKKREFFHSQ KAQRMELDVL YSDHDSEDEL DHDIADFEDR TLLGGFSDVA EEEKRIMHMW NSFKRRQRIL ADGHVPWACE AFTHQHGQEL
601: VQNPRLRWCW RVLMIKLWNH GLLNGRTMNI CNKHLEVLES QRADPKQS
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.