Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 95.14 | 92.78 |
| Os08t0137100-01 | Rice | cytosol | 68.5 | 86.17 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 67.86 | 84.7 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 67.44 | 84.39 |
| Zm00001d024698_P002 | Maize | cytosol | 67.44 | 84.17 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 80.55 | 80.04 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 61.52 | 79.08 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 58.99 | 75.41 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 71.04 | 73.85 |
| Solyc07g064090.2.1 | Tomato | nucleus | 57.93 | 73.66 |
| PGSC0003DMT400049479 | Potato | cytosol | 57.72 | 73.39 |
| KRH31935 | Soybean | cytosol | 58.56 | 72.51 |
| KRH71526 | Soybean | cytosol | 58.14 | 72.18 |
| OQU79846 | Sorghum | plastid | 71.88 | 69.11 |
| KRH22237 | Soybean | cytosol | 55.6 | 68.31 |
| AT3G20740.1 | Thale cress | cytosol | 52.64 | 67.48 |
| CDY53612 | Canola | plastid | 51.59 | 66.12 |
| CDY27567 | Canola | plastid | 51.59 | 66.12 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 30.44 | 64.0 |
| Os08t0137250-01 | Rice | cytosol | 57.93 | 58.8 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 48.84 | 58.63 |
| CDY06378 | Canola | mitochondrion | 33.19 | 58.36 |
| CDY19611 | Canola | plastid | 46.51 | 57.89 |
| Zm00001d049608_P001 | Maize | mitochondrion | 54.97 | 56.4 |
| CDY56255 | Canola | cytosol | 46.72 | 56.23 |
| EES13318 | Sorghum | mitochondrion | 53.28 | 56.12 |
| CDY68274 | Canola | cytosol, nucleus | 23.04 | 53.43 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 30.87 | 48.99 |
| Bra041121.1-P | Field mustard | cytosol | 5.5 | 36.62 |
| CDY10986 | Canola | extracellular | 9.09 | 20.87 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 |
| GO:GO:0035098 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS7A01G308300 | EnsemblPlants:TraesCS7A01G308300.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:436070797..436075633
Molecular Weight (calculated)
52449.3 Da
IEP (calculated)
8.330
GRAVY (calculated)
-0.347
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPNDETPL VGSNGKMQYK SRRKNATTPE VVTRRRSQRR PITPAEAEAR AATAFADAAA ASKAWAERKG RGRGKRKAAA EEEKQAPEPQ PLPARMARLG
101: PGQGLGCEAA VGSLAPSRSR EYKLCSKHTE GKRPLYAIGF NFIDARYYDV FATVGGNRAT TYRGLPDGNL AVLQAYIDAD DAQSFYTLSW ACDLDGTPLL
201: VAAGSNAVIR VINCATEKLF KSFLGHGDSI NEIRTQPLKP SLFISASKDE SVRLWNVHTG ICILIFAGGG GHRNEVLSVD FHPSDIYRIA SCGMDNTVKI
301: WSMKEFWPYV EKSFTWTDLP SKFPTKFVQF PLMTSVVHSN YVDCTRWLGD FILSKSVDNE IVLWEPKIKE QGPGEGSIDV LQKYPVPDCD IWFIKFSCDF
401: HFNQLAIGNR EGKIYVWEVQ ASPPVLITRL SSPQCKMPIR QTAVSFDGST ILACGEDGSI YRWDEVEHQA AKN
101: PGQGLGCEAA VGSLAPSRSR EYKLCSKHTE GKRPLYAIGF NFIDARYYDV FATVGGNRAT TYRGLPDGNL AVLQAYIDAD DAQSFYTLSW ACDLDGTPLL
201: VAAGSNAVIR VINCATEKLF KSFLGHGDSI NEIRTQPLKP SLFISASKDE SVRLWNVHTG ICILIFAGGG GHRNEVLSVD FHPSDIYRIA SCGMDNTVKI
301: WSMKEFWPYV EKSFTWTDLP SKFPTKFVQF PLMTSVVHSN YVDCTRWLGD FILSKSVDNE IVLWEPKIKE QGPGEGSIDV LQKYPVPDCD IWFIKFSCDF
401: HFNQLAIGNR EGKIYVWEVQ ASPPVLITRL SSPQCKMPIR QTAVSFDGST ILACGEDGSI YRWDEVEHQA AKN
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.