CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19610	Canola	cytoskeleton, cytosol, nucleus	71.57	48.99
CDY06378	Canola	mitochondrion	53.43	40.52
KRH27099	Soybean	cytosol, mitochondrion, nucleus	42.65	38.67
CDY19611	Canola	plastid	69.12	37.11
CDY56255	Canola	cytosol	69.61	36.13
CDY53612	Canola	plastid	63.73	35.23
CDY27567	Canola	plastid	63.24	34.96
CDY19607	Canola	cytosol, nucleus, plastid	66.18	34.26
Solyc07g064090.2.1	Tomato	nucleus	59.8	32.8
PGSC0003DMT400049479	Potato	cytosol	59.8	32.8
GSMUA_Achr5P26370_001	Banana	cytosol	57.84	32.07
KRH31935	Soybean	cytosol	59.31	31.68
VIT_19s0014g05210.t01	Wine grape	plastid	56.86	31.35
KRH71526	Soybean	cytosol	58.33	31.23
Os08t0137100-01	Rice	cytosol	54.9	29.79
Zm00001d024698_P002	Maize	cytosol	54.9	29.55
KRH22237	Soybean	cytosol	54.41	28.83
TraesCS4A01G388400.1	Wheat	cytosol, plastid	51.96	28.04
TraesCS7A01G089100.1	Wheat	cytosol	51.96	27.97
TraesCS7D01G084500.1	Wheat	plastid	52.45	23.52
EES13318	Sorghum	mitochondrion	50.98	23.16
HORVU7Hr1G073410.1	Barley	cytosol	53.92	23.11
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	51.47	23.08
TraesCS7A01G308300.1	Wheat	nucleus, plastid	53.43	23.04
Zm00001d049608_P001	Maize	mitochondrion	51.47	22.78
OQU79846	Sorghum	plastid	54.9	22.76
TraesCS7D01G305100.1	Wheat	nucleus, plastid	53.43	22.47
Os08t0137250-01	Rice	cytosol	50.49	22.1
CDY10986	Canola	extracellular	14.71	14.56

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A078JNE2	EnsemblPlants:CDY68274	ProteinID:CDY68274	ProteinID:CDY68274.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:GSBRNA2T00072747001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDD0DB
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaAnng26700DBnaAnng26700D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JNE2]

Coordinates

chrLK037095:-:3359..6414

Molecular Weight (calculated)

23090.3 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.168

Length

204 amino acids

Sequence
(BLAST)

001: SYFIDDRFYN YFVSGGGNGI NKCICLEDGD ISPLHSYTDE DEESFYTASW ACVVERNPFV VAGGFNGRIR VINVNDKMVH KTLVGHEGPV NEIRTHPMKP
101: QLVLSASKDG SVRLWNIETG ICILVFAGTG GHRSEVLSVD FHPSDMTRFV SCDMEATTKI WSMTESWKYV EMSFTWKDDQ KTFPTQVVQF PVSIFLFLCP
201: CNNE

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.