Factsheet for HORVU7Hr1G073410.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G039890.2
HORVU4Hr1G053740.8
HORVU7Hr1G026840.1
HORVU7Hr1G026910.29
HORVU7Hr1G055440.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	10962025
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	11114524
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	11148284
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	12970192
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	15456723
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	15469499
AT3G20740.1	HORVU4Hr1G053740.8	AT1G02580.1	18812497
AT3G20740.1	HORVU7Hr1G026840.1	AT2G23380.1	14871310
AT3G20740.1	HORVU7Hr1G026910.29	AT2G23380.1	14871310
AT3G20740.1	HORVU7Hr1G026840.1	AT2G23380.1	15456723
AT3G20740.1	HORVU7Hr1G026910.29	AT2G23380.1	15456723
AT3G20740.1	HORVU7Hr1G026840.1	AT2G23380.1	18812497
AT3G20740.1	HORVU7Hr1G026910.29	AT2G23380.1	18812497
AT3G20740.1	HORVU4Hr1G039890.2	AT3G12280.1	15221456
AT3G20740.1	HORVU7Hr1G055440.9	AT3G12280.1	15221456
AT3G20740.1	HORVU4Hr1G039890.2	AT3G12280.1	18812497
AT3G20740.1	HORVU7Hr1G055440.9	AT3G12280.1	18812497
AT3G20740.1	HORVU4Hr1G053740.8	AT4G02020.1	15456723

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0137100-01	Rice	cytosol	68.07	86.17
Zm00001d024698_P002	Maize	cytosol	67.23	84.43
TraesCS7A01G089100.1	Wheat	cytosol	66.81	83.91
TraesCS4A01G388400.1	Wheat	cytosol, plastid	66.6	83.86
TraesCS7D01G305100.1	Wheat	nucleus, plastid	82.14	80.62
TraesCS7A01G308300.1	Wheat	nucleus, plastid	80.04	80.55
GSMUA_Achr5P26370_001	Banana	cytosol	61.34	79.35
VIT_19s0014g05210.t01	Wine grape	plastid	58.82	75.68
Solyc07g064090.2.1	Tomato	nucleus	58.19	74.46
PGSC0003DMT400049479	Potato	cytosol	58.19	74.46
TraesCS7D01G084500.1	Wheat	plastid	69.54	72.75
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	69.54	72.75
KRH71526	Soybean	cytosol	58.19	72.7
KRH31935	Soybean	cytosol	57.98	72.25
KRH22237	Soybean	cytosol	54.62	67.53
OQU79846	Sorghum	plastid	69.54	67.28
AT3G20740.1	Thale cress	cytosol	51.68	66.67
CDY53612	Canola	plastid	50.63	65.31
CDY27567	Canola	plastid	50.63	65.31
KRH27099	Soybean	cytosol, mitochondrion, nucleus	30.46	64.44
CDY06378	Canola	mitochondrion	32.56	57.62
CDY19607	Canola	cytosol, nucleus, plastid	47.69	57.61
CDY19611	Canola	plastid	45.8	57.37
Os08t0137250-01	Rice	cytosol	55.67	56.87
EES13318	Sorghum	mitochondrion	52.73	55.9
CDY56255	Canola	cytosol	46.01	55.73
Zm00001d049608_P001	Maize	mitochondrion	52.73	54.45
CDY68274	Canola	cytosol, nucleus	23.11	53.92
CDY19610	Canola	cytoskeleton, cytosol, nucleus	30.25	48.32
Bra041121.1-P	Field mustard	cytosol	5.67	38.03
CDY10986	Canola	extracellular	9.24	21.36

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A287WVU6	EMBL:AK371754	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:HORVU7Hr1G073410	EnsemblPlants:HORVU7Hr1G073410.1
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000B4798F3	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr7H:+:415781576..415786825

Molecular Weight (calculated)

52744.5 Da

IEP (calculated)

6.911

GRAVY (calculated)

-0.321

Length

476 amino acids

Sequence
(BLAST)

001: MSNPNDETPL MGSNGKRQYK PRLKTATTPE VDTLRRSQRR PITPAEADAA TAAAFVDAVA ATKAWAERKA REKAKGKAAA AAAEEEEEPS EPQPLPARMA
101: RLGPGQGLGC EAAVGSLTPS RSREYKLCSK HTEGKRPLYA IGFNFIDARY YDVFATVGGN RVTTYRGLPD GNLAVLQAYI DGDNAQSFYT LSWACDLDGT
201: PLLVAAGSNA VIRVINCATE KLFKTFLGHG DSINEIRTQP LKPSLFISAS KDESVRLWNV HTGICILIFA GGGGHRNEVL SVDFHPSDIY RIASCGMDNT
301: VKIWSMKEFW PYVEKSFTWT DLPSKFPTKY VQFPLMTSVV HSNYVDCTRW LGDFILSKSV DNEIVLWEPK TKEQGAAEGS IDVLQKYPVP DCDIWFIKFS
401: CDFHFNQLAI GNREGKIYVW EVQTSPPVLI TRLSSPQCKM PIRQTAVSFD GSTILACGED GSIYRWDEVE HQSVKN

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.