Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- cytoskeleton 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G089100.1 | Wheat | cytosol | 81.54 | 97.89 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 76.92 | 92.59 |
| TraesCS7D01G084500.1 | Wheat | plastid | 92.31 | 92.31 |
| Os08t0137100-01 | Rice | cytosol | 61.1 | 73.94 |
| Zm00001d024698_P002 | Maize | cytosol | 61.32 | 73.61 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 73.85 | 71.04 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 72.75 | 69.54 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 55.82 | 69.02 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 53.63 | 65.95 |
| Solyc07g064090.2.1 | Tomato | nucleus | 52.97 | 64.78 |
| PGSC0003DMT400049479 | Potato | cytosol | 52.75 | 64.52 |
| KRH71526 | Soybean | cytosol | 53.19 | 63.52 |
| KRH31935 | Soybean | cytosol | 53.19 | 63.35 |
| KRH22237 | Soybean | cytosol | 51.43 | 60.78 |
| AT3G20740.1 | Thale cress | cytosol | 48.79 | 60.16 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 29.23 | 59.11 |
| CDY53612 | Canola | plastid | 47.91 | 59.08 |
| CDY27567 | Canola | plastid | 47.91 | 59.08 |
| OQU79846 | Sorghum | plastid | 63.52 | 58.74 |
| Os08t0137250-01 | Rice | cytosol | 58.46 | 57.08 |
| EES13318 | Sorghum | mitochondrion | 56.04 | 56.79 |
| CDY06378 | Canola | mitochondrion | 33.41 | 56.51 |
| Zm00001d049608_P001 | Maize | mitochondrion | 56.92 | 56.18 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 45.93 | 53.05 |
| CDY19611 | Canola | plastid | 44.18 | 52.89 |
| CDY68274 | Canola | cytosol, nucleus | 23.08 | 51.47 |
| CDY56255 | Canola | cytosol | 44.18 | 51.15 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 30.33 | 46.31 |
| Bra041121.1-P | Field mustard | cytosol | 5.71 | 36.62 |
| CDY10986 | Canola | extracellular | 9.45 | 20.87 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 |
| GO:GO:0035098 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 |
| SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS7A01G089200 | EnsemblPlants:TraesCS7A01G089200.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:54188737..54193032
Molecular Weight (calculated)
49956.4 Da
IEP (calculated)
6.920
GRAVY (calculated)
-0.258
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPNDETPL MGSTGNATTT PEVDTRRRSQ RRPIPPAQAT AAAATKAPAE RKGGGKGKGK AAVEEEEAPE PQPLPAPMAS LRPVQGLGCD AAVGSLVPSG
101: SREFKLCSKH TEGKHPLYAI SFNFIDARYY DIFATAGGNR VTTYRGLPDG NLAVLQAYID ADDAQSFYTV SWVSDLRSTP LLVAAGTNMV IRVINCATGK
201: LFKSFIGHGG SINEIRTQPL NPSLFISASK DESVRLWNVH TGICILIFAG GGGHRHDVLS VDFHPSDVHR IASCGMDNTV KIWSMKEFSP YVKKSFTWTD
301: LPSKFPTKVV QFPLMTCVVH SNYVDCTRWL GDFILSKSVE NEIVLWEPKT KEQGHGEDSI DVLQKYPVPD CDIWCIKFSC DFHFNQLAIG NREGKIYVWD
401: VQTCPPELIT MLSSPQCKMT IRQTAVSFDG STIVACSKDG SIYRWDEVEH EAAKN
101: SREFKLCSKH TEGKHPLYAI SFNFIDARYY DIFATAGGNR VTTYRGLPDG NLAVLQAYID ADDAQSFYTV SWVSDLRSTP LLVAAGTNMV IRVINCATGK
201: LFKSFIGHGG SINEIRTQPL NPSLFISASK DESVRLWNVH TGICILIFAG GGGHRHDVLS VDFHPSDVHR IASCGMDNTV KIWSMKEFSP YVKKSFTWTD
301: LPSKFPTKVV QFPLMTCVVH SNYVDCTRWL GDFILSKSVE NEIVLWEPKT KEQGHGEDSI DVLQKYPVPD CDIWCIKFSC DFHFNQLAIG NREGKIYVWD
401: VQTCPPELIT MLSSPQCKMT IRQTAVSFDG STIVACSKDG SIYRWDEVEH EAAKN
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.