Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 47.09 | 89.74 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 96.86 | 50.47 |
| TraesCSU01G072700.1 | Wheat | nucleus | 96.41 | 50.23 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 96.41 | 50.23 |
| Os03t0640100-01 | Rice | cytosol | 91.03 | 47.43 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 87.0 | 45.75 |
| KRH42369 | Soybean | nucleus | 86.55 | 45.41 |
| KRH58491 | Soybean | nucleus | 86.55 | 45.41 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 86.1 | 45.39 |
| PGSC0003DMT400061016 | Potato | cytosol | 86.1 | 45.28 |
| AT5G58230.1 | Thale cress | nucleus | 85.65 | 45.05 |
| Solyc01g104510.2.1 | Tomato | nucleus | 85.65 | 45.05 |
| CDY02805 | Canola | nucleus | 75.78 | 40.33 |
| CDY43875 | Canola | nucleus | 76.68 | 40.14 |
| Bra002667.1-P | Field mustard | nucleus | 74.89 | 39.2 |
| CDY62688 | Canola | nucleus | 74.89 | 39.2 |
| CDY32715 | Canola | nucleus | 72.65 | 38.94 |
| Bra020379.1-P | Field mustard | cytosol | 72.65 | 38.94 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 72.2 | 38.33 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 91.93 | 33.72 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 59.19 | 32.67 |
| CDY58569 | Canola | cytosol | 82.06 | 28.77 |
| CDX88663 | Canola | nucleus | 82.06 | 28.77 |
| TraesCS3D01G251300.2 | Wheat | nucleus | 33.18 | 15.71 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 21.52 | 15.14 |
| TraesCS4D01G126000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 26.01 | 12.03 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G385800.1 | EnsemblPlantsGene:TraesCS5D01G385800 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | PFAM:PF00400 | PFscan:PS50082 | PFscan:PS50294 |
| SMART:SM00320 | SUPFAM:SSF50978 | MapMan:12.2.1.3 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:455607000..455609552
Molecular Weight (calculated)
25323.7 Da
IEP (calculated)
4.444
GRAVY (calculated)
-0.359
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKLIGLDIC PKNKTLDAYQ IFKFHDGVVE DVAWHLRHEY LFGSVGDDHH LLICDMRTPA PTKPVQSVVA NQGEVNCLAF NPFNEWVVAT GSTNKTVKLF
101: DLRKIDTSLH TFDCHKEEVF QVGWSPKNET ILASCCLGRR LMVWDLSRID QEQTPEDAED GPPELLFIHG GHTSKISDFS WNPCEDWVLA SVAEDNILQI
201: WQMAENIYHD EDDLPSDEPA KAS
101: DLRKIDTSLH TFDCHKEEVF QVGWSPKNET ILASCCLGRR LMVWDLSRID QEQTPEDAED GPPELLFIHG GHTSKISDFS WNPCEDWVLA SVAEDNILQI
201: WQMAENIYHD EDDLPSDEPA KAS
001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS
Arabidopsis Description
MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.