Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G273300.1 | Wheat | nucleus | 96.8 | 94.9 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 98.0 | 89.09 |
| Os01t0886200-01 | Rice | nucleus | 72.4 | 68.3 |
| Zm00001d042591_P002 | Maize | nucleus | 70.0 | 65.3 |
| KRH14461 | Soybean | nucleus | 26.4 | 63.46 |
| EES01878 | Sorghum | nucleus | 69.6 | 62.82 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 56.4 | 62.39 |
| KRH21150 | Soybean | nucleus | 54.8 | 56.38 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 56.0 | 55.56 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 38.8 | 55.43 |
| CDY09267 | Canola | nucleus | 55.2 | 55.42 |
| KRH46066 | Soybean | nucleus | 53.6 | 54.25 |
| Bra012564.1-P | Field mustard | nucleus | 54.4 | 54.18 |
| CDX98597 | Canola | nucleus | 54.4 | 54.18 |
| KRG98899 | Soybean | nucleus | 53.2 | 54.06 |
| PGSC0003DMT400073134 | Potato | nucleus | 53.2 | 53.63 |
| Bra013364.1-P | Field mustard | nucleus | 54.0 | 53.57 |
| CDX78909 | Canola | nucleus | 54.0 | 53.57 |
| AT4G18960.1 | Thale cress | nucleus | 54.0 | 53.57 |
| Solyc02g071730.2.1 | Tomato | nucleus | 52.8 | 53.23 |
| Bra004716.1-P | Field mustard | nucleus | 51.2 | 52.46 |
| CDX79857 | Canola | nucleus | 51.2 | 52.46 |
| KRH42930 | Soybean | nucleus | 50.8 | 52.26 |
| KRH73684 | Soybean | nucleus | 50.8 | 51.63 |
| KRH59043 | Soybean | nucleus | 50.0 | 51.44 |
| Bra014552.1-P | Field mustard | nucleus | 50.8 | 51.21 |
| Bra007419.1-P | Field mustard | nucleus | 50.0 | 51.02 |
| CDX98330 | Canola | nucleus | 50.4 | 50.81 |
| AT2G42830.2 | Thale cress | nucleus | 50.4 | 50.81 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 54.8 | 50.0 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 52.8 | 48.18 |
| Solyc07g055920.2.1 | Tomato | nucleus | 50.8 | 47.57 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 18.4 | 47.42 |
| PGSC0003DMT400044552 | Potato | nucleus | 48.0 | 47.24 |
| AT3G58780.4 | Thale cress | nucleus | 51.6 | 45.91 |
| CDY49254 | Canola | nucleus | 50.4 | 45.82 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 49.2 | 45.72 |
| CDX89005 | Canola | nucleus | 50.4 | 45.65 |
| CDY00589 | Canola | nucleus | 50.0 | 45.45 |
| CDX99406 | Canola | nucleus | 54.0 | 43.27 |
| Bra003356.1-P | Field mustard | nucleus | 46.0 | 42.12 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 34.8 | 38.67 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 34.4 | 37.89 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 34.0 | 37.44 |
| CDX67765 | Canola | nucleus | 50.4 | 36.21 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 34.0 | 35.42 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 33.2 | 34.44 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 34.0 | 34.27 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 32.0 | 33.9 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 30.8 | 33.48 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 33.6 | 33.33 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 32.0 | 33.2 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 32.8 | 33.06 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 30.4 | 33.04 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 30.4 | 32.48 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 30.0 | 31.78 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 30.8 | 31.69 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 33.6 | 31.46 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 29.2 | 31.33 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 27.6 | 30.67 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 33.2 | 30.51 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 30.4 | 29.92 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 32.0 | 29.52 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1D01G262700 | EnsemblPlants:TraesCS1D01G262700.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:356928772..356932113
Molecular Weight (calculated)
27648.9 Da
IEP (calculated)
9.904
GRAVY (calculated)
-0.481
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSA RGRLYEYASN STRTTIDRYK KASASASGSA PAIDVNSQQY FQQESAKLRH
101: QIQSLQNANR NLMGESVGNL TLKELKSLEN RLDKGIGRIR AKKHELLFAE IEYMQKLEAD LQSENMYLRA KVAEAERLAL AAPPPSSGSG AELEVLPTFD
201: ARSYYHHQAV NMLQDAAAAS SSSRYSQSSQ AAAATTALHL GYQIKGAQLN
101: QIQSLQNANR NLMGESVGNL TLKELKSLEN RLDKGIGRIR AKKHELLFAE IEYMQKLEAD LQSENMYLRA KVAEAERLAL AAPPPSSGSG AELEVLPTFD
201: ARSYYHHQAV NMLQDAAAAS SSSRYSQSSQ AAAATTALHL GYQIKGAQLN
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.