Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G045700.1 | Wheat | nucleus | 95.34 | 95.34 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 75.42 | 89.9 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 82.2 | 79.84 |
| HORVU1Hr1G008300.3 | Barley | nucleus | 89.41 | 74.3 |
| Os06t0347700-00 | Rice | nucleus | 45.34 | 72.79 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 68.22 | 72.2 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 14.83 | 53.03 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 53.39 | 52.5 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 52.97 | 51.23 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 14.83 | 50.72 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 19.92 | 50.54 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 47.88 | 49.13 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 47.03 | 48.26 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 47.88 | 48.09 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 47.88 | 47.88 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 48.73 | 47.72 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 46.61 | 47.41 |
| CDX72465 | Canola | nucleus | 47.88 | 47.08 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 37.29 | 47.06 |
| CDY49287 | Canola | nucleus | 47.46 | 46.67 |
| Bra017638.1-P | Field mustard | nucleus | 47.46 | 46.67 |
| AT3G57230.1 | Thale cress | nucleus | 47.03 | 46.25 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 47.88 | 46.12 |
| CDX69036 | Canola | nucleus | 46.19 | 45.42 |
| CDX75412 | Canola | nucleus | 45.76 | 45.0 |
| KRH42047 | Soybean | nucleus | 42.8 | 41.91 |
| Bra011509.1-P | Field mustard | nucleus | 41.95 | 34.14 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 20.76 | 33.11 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 32.63 | 30.68 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 27.97 | 30.56 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 29.24 | 30.4 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 30.08 | 30.08 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 32.63 | 28.84 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 33.47 | 28.83 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 30.51 | 28.57 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 30.08 | 28.17 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 29.24 | 28.05 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 30.08 | 27.84 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 30.51 | 27.8 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 28.39 | 27.13 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 30.51 | 26.77 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 27.54 | 26.32 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 31.78 | 24.19 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 17.37 | 21.93 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1B01G058300 | EnsemblPlants:TraesCS1B01G058300.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:40386745..40390753
Molecular Weight (calculated)
26518.5 Da
IEP (calculated)
7.735
GRAVY (calculated)
-0.692
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTVIEK IKNTTSRQVT FSKRKGGLFK KARELGVLCD AQVGVLLFSN TGRLYDYSNS NSGMKSLLER YQQVKEGQQF MSASAQAKFW QAEGERLRQQ
101: LHNLQENNRQ LLGQHLSGLG LEDLSGLEKQ LETSLHNIRL AKDQLTIDEI EEFNKKGNLV HQENVELHKE LNIIHQENIY LQSKLNGQPE ANGAITSSSS
201: QCSIAARDGA NLVRLELSKP HHAEKDEEPE SPTLGL
101: LHNLQENNRQ LLGQHLSGLG LEDLSGLEKQ LETSLHNIRL AKDQLTIDEI EEFNKKGNLV HQENVELHKE LNIIHQENIY LQSKLNGQPE ANGAITSSSS
201: QCSIAARDGA NLVRLELSKP HHAEKDEEPE SPTLGL
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.