Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G058100.1 | Wheat | nucleus | 92.59 | 92.59 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 91.77 | 91.77 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 81.07 | 83.47 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 77.37 | 80.34 |
| Os06t0347700-00 | Rice | nucleus | 43.62 | 72.11 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 53.09 | 53.75 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 53.91 | 53.69 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 21.4 | 53.61 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 47.74 | 49.36 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 46.5 | 49.13 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 46.91 | 48.31 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 45.27 | 47.83 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 48.15 | 47.76 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 45.68 | 47.64 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 46.5 | 46.89 |
| CDX72465 | Canola | nucleus | 46.09 | 46.67 |
| Bra017638.1-P | Field mustard | nucleus | 45.68 | 46.25 |
| CDY49287 | Canola | nucleus | 45.68 | 46.25 |
| CDX69036 | Canola | nucleus | 45.68 | 46.25 |
| CDX75412 | Canola | nucleus | 45.27 | 45.83 |
| AT3G57230.1 | Thale cress | nucleus | 44.86 | 45.42 |
| KRH42047 | Soybean | nucleus | 43.62 | 43.98 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 36.63 | 39.56 |
| Bra011509.1-P | Field mustard | nucleus | 41.15 | 34.48 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 20.99 | 34.46 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 30.45 | 32.6 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 31.28 | 32.2 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 30.04 | 32.16 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 32.92 | 31.5 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 28.81 | 31.11 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 32.1 | 30.95 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 32.1 | 30.95 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 31.69 | 30.8 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 33.74 | 30.26 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 30.86 | 30.24 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 32.92 | 29.96 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 33.74 | 29.93 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 32.92 | 29.41 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 28.81 | 29.05 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 30.45 | 27.51 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 27.57 | 27.02 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1D01G045500 | EnsemblPlants:TraesCS1D01G045500.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr1D:+:24787707..24791225
Molecular Weight (calculated)
27872.2 Da
IEP (calculated)
7.325
GRAVY (calculated)
-0.721
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTVIER IENTTSRQVT FSKRKSGLFK KARELGVLCD AQVAVVLFSN TGRLYDYSNC NSGMKSIIER YQHVKEGQQF MSASAEAKFW QAEGERLRQQ
101: LHNLQENHRQ LLGQHLSGLG LEDMRGLESQ LETSIHNIRL TKDQLMIDEI EELNKKESLV HQENIELHKK LNIIRQENIY LQNKLNGEAE VNGTITSSSS
201: QYSTAAREDP VRLELSHPDH AERDEQPELP MLGLKVFTTR TGR
101: LHNLQENHRQ LLGQHLSGLG LEDMRGLESQ LETSIHNIRL TKDQLMIDEI EELNKKESLV HQENIELHKK LNIIRQENIY LQNKLNGEAE VNGTITSSSS
201: QYSTAAREDP VRLELSHPDH AERDEQPELP MLGLKVFTTR TGR
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Arabidopsis Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.