Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G127700.1 | Wheat | nucleus | 99.26 | 99.26 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 98.51 | 98.51 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 92.57 | 76.38 |
| Os05t0203800-02 | Rice | nucleus | 76.95 | 76.1 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 17.84 | 72.73 |
| KRH14461 | Soybean | nucleus | 27.14 | 70.19 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 17.1 | 66.67 |
| GSMUA_Achr10P... | Banana | nucleus | 55.76 | 65.5 |
| OQU77603 | Sorghum | nucleus | 69.14 | 63.7 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 53.16 | 63.27 |
| CDY09267 | Canola | nucleus | 55.39 | 59.84 |
| KRH21150 | Soybean | nucleus | 53.9 | 59.67 |
| CDX78909 | Canola | nucleus | 55.76 | 59.52 |
| Bra013364.1-P | Field mustard | nucleus | 55.76 | 59.52 |
| Solyc02g071730.2.1 | Tomato | nucleus | 54.65 | 59.27 |
| KRH42930 | Soybean | nucleus | 53.53 | 59.26 |
| Zm00001d037737_P001 | Maize | nucleus | 67.29 | 59.15 |
| Bra012564.1-P | Field mustard | nucleus | 55.02 | 58.96 |
| CDX98597 | Canola | nucleus | 55.02 | 58.96 |
| PGSC0003DMT400073134 | Potato | nucleus | 54.28 | 58.87 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 55.39 | 58.66 |
| AT4G18960.1 | Thale cress | nucleus | 54.65 | 58.33 |
| KRH59043 | Soybean | nucleus | 52.42 | 58.02 |
| KRH73684 | Soybean | nucleus | 52.42 | 57.32 |
| KRG98899 | Soybean | nucleus | 52.04 | 56.91 |
| KRH46066 | Soybean | nucleus | 52.04 | 56.68 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 65.06 | 56.45 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 51.3 | 54.76 |
| CDX79857 | Canola | nucleus | 48.33 | 53.28 |
| Bra004716.1-P | Field mustard | nucleus | 48.33 | 53.28 |
| Bra007419.1-P | Field mustard | nucleus | 47.96 | 52.65 |
| Solyc07g055920.2.1 | Tomato | nucleus | 52.04 | 52.43 |
| Bra014552.1-P | Field mustard | nucleus | 48.33 | 52.42 |
| CDX98330 | Canola | nucleus | 48.33 | 52.42 |
| PGSC0003DMT400044552 | Potato | nucleus | 49.44 | 52.36 |
| AT2G42830.2 | Thale cress | nucleus | 47.58 | 51.61 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 51.3 | 50.37 |
| CDX99406 | Canola | nucleus | 56.13 | 48.4 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 45.72 | 48.24 |
| AT3G58780.4 | Thale cress | nucleus | 49.81 | 47.69 |
| GSMUA_Achr10P... | Banana | nucleus | 56.51 | 47.65 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 16.36 | 47.31 |
| CDY49254 | Canola | nucleus | 48.33 | 47.27 |
| CDX89005 | Canola | nucleus | 47.96 | 46.74 |
| CDY00589 | Canola | nucleus | 47.58 | 46.55 |
| Bra003356.1-P | Field mustard | nucleus | 43.87 | 43.22 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 31.6 | 39.35 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 32.34 | 38.33 |
| CDX67765 | Canola | nucleus | 49.07 | 37.93 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 32.34 | 36.86 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 33.83 | 36.84 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 32.34 | 36.1 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 34.57 | 35.91 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 33.46 | 35.71 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 32.34 | 35.22 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 31.97 | 34.96 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 29.0 | 33.91 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 23.42 | 33.69 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 30.86 | 33.07 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 28.25 | 33.04 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 27.14 | 32.74 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 29.0 | 32.5 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 28.62 | 31.69 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 27.14 | 31.47 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 30.48 | 30.71 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 26.77 | 30.51 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 30.86 | 30.29 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 16.36 | 23.53 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF332 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1B01G144800 | EnsemblPlants:TraesCS1B01G144800.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:198145546..198153968
Molecular Weight (calculated)
30412.2 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.778
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MQILNEQLAA PSTGLMVKES ASPGSGSGSP GGAAEKMGRG RIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSGRGRL YEYSNNSVKA
101: TIERYKKATS DTSSAGTVAE INAQHYQQES AKLKQQITTL QNSNRTLIGD TMATMSHRDL KQLEGRLDKG LGKIRARKNE LLCAEIEYMQ RREMELQNNN
201: FFLREKVAET ERGQQQTLNM MGAASTSNEY EQNMIHCDPR TFLQFNFMQQ QPQYYSQQED RKSLNSVGR
101: TIERYKKATS DTSSAGTVAE INAQHYQQES AKLKQQITTL QNSNRTLIGD TMATMSHRDL KQLEGRLDKG LGKIRARKNE LLCAEIEYMQ RREMELQNNN
201: FFLREKVAET ERGQQQTLNM MGAASTSNEY EQNMIHCDPR TFLQFNFMQQ QPQYYSQQED RKSLNSVGR
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.