Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71922 | Canola | nucleus | 48.39 | 88.89 |
| CDY72391 | Canola | nucleus | 26.61 | 88.0 |
| CDX89005 | Canola | nucleus | 93.55 | 84.06 |
| CDY00589 | Canola | nucleus | 93.15 | 84.0 |
| Bra003356.1-P | Field mustard | nucleus | 92.34 | 83.88 |
| CDY49254 | Canola | nucleus | 92.34 | 83.27 |
| CDX79857 | Canola | nucleus | 81.45 | 82.79 |
| AT3G58780.4 | Thale cress | nucleus | 93.55 | 82.56 |
| CDX79856 | Canola | nucleus | 29.03 | 80.9 |
| KRH14461 | Soybean | nucleus | 32.26 | 76.92 |
| CDX67765 | Canola | nucleus | 97.98 | 69.83 |
| KRG98899 | Soybean | nucleus | 64.92 | 65.45 |
| KRH46066 | Soybean | nucleus | 64.92 | 65.18 |
| KRH73684 | Soybean | nucleus | 64.11 | 64.63 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 43.55 | 61.71 |
| GSMUA_Achr10P... | Banana | nucleus | 56.45 | 61.14 |
| CDY09267 | Canola | nucleus | 60.89 | 60.64 |
| Solyc07g055920.2.1 | Tomato | nucleus | 64.92 | 60.3 |
| CDX78909 | Canola | nucleus | 60.89 | 59.92 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 65.32 | 59.12 |
| PGSC0003DMT400044552 | Potato | nucleus | 60.48 | 59.06 |
| CDX98597 | Canola | nucleus | 59.68 | 58.96 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 56.85 | 55.51 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 14.92 | 55.22 |
| CDX90741 | Canola | nucleus | 51.21 | 54.98 |
| Zm00001d039434_P001 | Maize | nucleus | 55.24 | 52.29 |
| EES00105 | Sorghum | nucleus | 55.65 | 51.3 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 52.02 | 51.19 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 52.02 | 51.19 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 55.65 | 50.92 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 51.61 | 50.79 |
| CDY13236 | Canola | mitochondrion | 41.13 | 50.75 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 50.81 | 50.4 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 55.24 | 50.18 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 55.24 | 50.0 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 51.21 | 50.0 |
| Os01t0201700-02 | Rice | nucleus | 55.24 | 49.64 |
| Zm00001d023955_P003 | Maize | nucleus | 52.82 | 49.43 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 50.81 | 49.41 |
| Os05t0203800-02 | Rice | nucleus | 54.03 | 49.26 |
| EES15827 | Sorghum | nucleus | 52.42 | 48.33 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 52.42 | 48.33 |
| Zm00001d042591_P002 | Maize | nucleus | 52.02 | 48.13 |
| CDX99406 | Canola | nucleus | 60.48 | 48.08 |
| CDY01574 | Canola | nucleus | 23.79 | 47.97 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 52.02 | 47.96 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 52.02 | 47.96 |
| Os12t0207000-01 | Rice | nucleus | 52.02 | 47.78 |
| EES01878 | Sorghum | nucleus | 52.82 | 47.29 |
| Os01t0886200-01 | Rice | nucleus | 50.4 | 47.17 |
| Zm00001d041781_P001 | Maize | nucleus | 53.23 | 45.99 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 50.81 | 45.82 |
| CDY65347 | Canola | nucleus | 29.03 | 45.57 |
| CDY48451 | Canola | nucleus | 27.82 | 45.1 |
| GSMUA_Achr10P... | Banana | nucleus | 57.66 | 44.83 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 55.24 | 44.19 |
| CDY19977 | Canola | nucleus | 17.74 | 43.14 |
| CDY60297 | Canola | nucleus | 50.4 | 42.81 |
| OQU77603 | Sorghum | nucleus | 47.98 | 40.75 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 52.82 | 40.18 |
| Zm00001d037737_P001 | Maize | nucleus | 49.19 | 39.87 |
| Zm00001d008882_P001 | Maize | nucleus | 50.0 | 37.69 |
| CDY11824 | Canola | nucleus | 33.87 | 34.29 |
| CDY66153 | Canola | nucleus | 33.87 | 34.29 |
| CDY26462 | Canola | nucleus | 35.08 | 34.25 |
| CDY43239 | Canola | nucleus | 34.27 | 34.0 |
| CDY71878 | Canola | endoplasmic reticulum | 35.89 | 33.84 |
| CDX72465 | Canola | nucleus | 32.66 | 33.75 |
| CDY49287 | Canola | nucleus | 32.66 | 33.75 |
| CDY15724 | Canola | nucleus | 34.27 | 33.73 |
| CDY57524 | Canola | nucleus | 33.87 | 33.6 |
| CDY34564 | Canola | nucleus | 29.44 | 33.49 |
| CDY36077 | Canola | nucleus | 29.84 | 33.48 |
| CDX69345 | Canola | nucleus | 30.65 | 33.48 |
| CDX69036 | Canola | nucleus | 32.26 | 33.33 |
| CDX69499 | Canola | nucleus | 35.48 | 33.33 |
| CDX75412 | Canola | nucleus | 32.26 | 33.33 |
| CDY18911 | Canola | nucleus | 31.85 | 33.33 |
| CDY34718 | Canola | nucleus | 33.87 | 33.33 |
| CDX78653 | Canola | nucleus | 34.68 | 33.2 |
| CDY27603 | Canola | nucleus | 33.87 | 33.2 |
| CDX84935 | Canola | nucleus | 33.47 | 33.07 |
| CDX70651 | Canola | nucleus | 34.27 | 32.82 |
| CDX90394 | Canola | nucleus | 30.24 | 32.75 |
| CDY25613 | Canola | nucleus | 29.84 | 32.46 |
| CDY02185 | Canola | nucleus | 31.45 | 32.37 |
| CDX75686 | Canola | nucleus | 29.84 | 32.31 |
| CDX89496 | Canola | nucleus | 29.84 | 32.31 |
| CDY53885 | Canola | nucleus | 33.47 | 32.3 |
| CDY42841 | Canola | nucleus | 31.05 | 32.08 |
| CDX74754 | Canola | nucleus | 33.06 | 32.03 |
| CDY16832 | Canola | nucleus | 31.05 | 31.95 |
| CDY58690 | Canola | nucleus | 31.05 | 31.95 |
| CDY18912 | Canola | nucleus | 30.65 | 31.54 |
| CDY47002 | Canola | nucleus | 30.65 | 31.54 |
| CDY03905 | Canola | nucleus | 34.27 | 31.48 |
| CDY04164 | Canola | nucleus | 31.85 | 30.62 |
| CDY45899 | Canola | nucleus | 29.84 | 29.72 |
| CDY02978 | Canola | nucleus | 30.65 | 29.69 |
| CDY51202 | Canola | nucleus | 30.65 | 29.57 |
| CDX86353 | Canola | nucleus | 29.44 | 29.32 |
| CDX89097 | Canola | nucleus | 29.03 | 29.27 |
| CDY00082 | Canola | nucleus | 29.03 | 29.03 |
| CDY65811 | Canola | nucleus | 29.84 | 28.91 |
| CDY33554 | Canola | nucleus | 29.44 | 28.52 |
| CDX95960 | Canola | nucleus | 29.03 | 28.12 |
| CDY04265 | Canola | nucleus | 30.24 | 27.08 |
| CDY07357 | Canola | nucleus | 30.24 | 25.95 |
| CDY33113 | Canola | nucleus | 31.85 | 25.57 |
| CDX71166 | Canola | nucleus | 30.65 | 21.84 |
| CDX85287 | Canola | nucleus | 15.32 | 20.32 |
| CDY42485 | Canola | nucleus | 29.84 | 19.58 |
| CDY35780 | Canola | nucleus | 15.32 | 19.29 |
| CDY45709 | Canola | nucleus | 10.08 | 14.45 |
| CDY49686 | Canola | nucleus | 10.08 | 14.45 |
| CDY65346 | Canola | cytosol | 1.21 | 12.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078E892 | EnsemblPlants:CDX98330 | ProteinID:CDX98330 | ProteinID:CDX98330.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00105875001 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EC6716 | : | : |
Description
BnaC06g16910D
Coordinates
chrLK031904:+:620389..623789
Molecular Weight (calculated)
28414.7 Da
IEP (calculated)
9.391
GRAVY (calculated)
-0.824
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGGSSHDA ESNKKLVRGK IEIKRIENTT SRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVKGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI NRVRSKKNEL LMAEIEYMQK REMELQHDNM YLRAKISQGA RLNPEQQDSS
201: VIQGTAVYEP GLSSHDQSQH YNRNYIPVNL LEPNLHFSGQ DQPPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI NRVRSKKNEL LMAEIEYMQK REMELQHDNM YLRAKISQGA RLNPEQQDSS
201: VIQGTAVYEP GLSSHDQSQH YNRNYIPVNL LEPNLHFSGQ DQPPLQLV
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.