Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000696.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY65346 | Canola | cytosol | 9.52 | 88.0 |
| CDY60297 | Canola | nucleus | 94.37 | 74.66 |
| CDY72391 | Canola | nucleus | 23.38 | 72.0 |
| CDY65347 | Canola | nucleus | 47.19 | 68.99 |
| CDX79856 | Canola | nucleus | 25.11 | 65.17 |
| GSMUA_Achr10P... | Banana | nucleus | 64.5 | 63.68 |
| CDY71878 | Canola | endoplasmic reticulum | 71.86 | 63.12 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 18.18 | 62.69 |
| CDX71922 | Canola | nucleus | 36.36 | 62.22 |
| AT4G09960.4 | Thale cress | nucleus | 87.88 | 61.7 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 61.9 | 59.83 |
| CDY09267 | Canola | nucleus | 59.74 | 55.42 |
| CDX78909 | Canola | nucleus | 59.74 | 54.76 |
| CDX79857 | Canola | nucleus | 57.58 | 54.51 |
| CDX98597 | Canola | nucleus | 58.87 | 54.18 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 64.07 | 52.11 |
| CDX98330 | Canola | nucleus | 54.98 | 51.21 |
| CDY49254 | Canola | nucleus | 55.84 | 46.91 |
| CDX89005 | Canola | nucleus | 54.55 | 45.65 |
| CDY48451 | Canola | nucleus | 29.87 | 45.1 |
| CDY13236 | Canola | mitochondrion | 38.96 | 44.78 |
| CDY00589 | Canola | nucleus | 53.25 | 44.73 |
| CDX99406 | Canola | nucleus | 60.17 | 44.55 |
| CDY19977 | Canola | nucleus | 19.05 | 43.14 |
| CDX67765 | Canola | nucleus | 55.41 | 36.78 |
| CDY01574 | Canola | nucleus | 19.48 | 36.59 |
| CDX69345 | Canola | nucleus | 35.06 | 35.68 |
| CDY25613 | Canola | nucleus | 34.63 | 35.09 |
| CDY18911 | Canola | nucleus | 35.93 | 35.02 |
| CDX90394 | Canola | nucleus | 34.63 | 34.93 |
| CDY43239 | Canola | nucleus | 37.66 | 34.8 |
| CDX72465 | Canola | nucleus | 35.93 | 34.58 |
| CDY34718 | Canola | nucleus | 37.66 | 34.52 |
| CDX89496 | Canola | nucleus | 34.2 | 34.5 |
| CDX75686 | Canola | nucleus | 34.2 | 34.5 |
| CDY57524 | Canola | nucleus | 37.23 | 34.4 |
| CDY66153 | Canola | nucleus | 36.36 | 34.29 |
| CDY11824 | Canola | nucleus | 36.36 | 34.29 |
| CDY49287 | Canola | nucleus | 35.5 | 34.17 |
| CDX75412 | Canola | nucleus | 35.5 | 34.17 |
| CDY18912 | Canola | nucleus | 35.5 | 34.02 |
| CDY26462 | Canola | nucleus | 37.23 | 33.86 |
| CDX69036 | Canola | nucleus | 35.06 | 33.75 |
| CDX74754 | Canola | nucleus | 37.23 | 33.59 |
| CDX78653 | Canola | nucleus | 37.66 | 33.59 |
| CDX70651 | Canola | nucleus | 37.66 | 33.59 |
| CDY15724 | Canola | nucleus | 36.36 | 33.33 |
| CDX69499 | Canola | nucleus | 37.66 | 32.95 |
| CDY42841 | Canola | nucleus | 34.2 | 32.92 |
| CDY27603 | Canola | nucleus | 35.93 | 32.81 |
| CDX84935 | Canola | nucleus | 35.5 | 32.67 |
| CDY36077 | Canola | nucleus | 31.17 | 32.58 |
| CDY34564 | Canola | nucleus | 30.74 | 32.57 |
| CDY58690 | Canola | nucleus | 33.77 | 32.37 |
| CDY47002 | Canola | nucleus | 33.77 | 32.37 |
| CDY16832 | Canola | nucleus | 33.33 | 31.95 |
| CDY02185 | Canola | nucleus | 33.33 | 31.95 |
| CDY53885 | Canola | nucleus | 35.5 | 31.91 |
| CDY04164 | Canola | nucleus | 35.5 | 31.78 |
| CDY02978 | Canola | nucleus | 34.63 | 31.25 |
| CDY51202 | Canola | nucleus | 34.63 | 31.13 |
| CDY03905 | Canola | nucleus | 36.36 | 31.11 |
| CDX89097 | Canola | nucleus | 32.47 | 30.49 |
| CDY65811 | Canola | nucleus | 32.03 | 28.91 |
| CDY00082 | Canola | nucleus | 30.74 | 28.63 |
| CDX95960 | Canola | nucleus | 31.17 | 28.12 |
| CDY33554 | Canola | nucleus | 31.17 | 28.12 |
| CDX86353 | Canola | nucleus | 30.3 | 28.11 |
| CDY45899 | Canola | nucleus | 30.3 | 28.11 |
| CDY04265 | Canola | nucleus | 32.03 | 26.71 |
| CDY33113 | Canola | nucleus | 35.06 | 26.21 |
| CDY07357 | Canola | nucleus | 32.03 | 25.61 |
| CDX71166 | Canola | nucleus | 33.33 | 22.13 |
| CDY42485 | Canola | nucleus | 32.9 | 20.11 |
| CDX85287 | Canola | nucleus | 14.29 | 17.65 |
| CDY45709 | Canola | nucleus | 12.99 | 17.34 |
| CDY49686 | Canola | nucleus | 12.55 | 16.76 |
| CDY35780 | Canola | nucleus | 13.85 | 16.24 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078DN97 | EnsemblPlants:CDX90741 | ProteinID:CDX90741 | ProteinID:CDX90741.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00151432001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF150 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00025402FF | : | : | : |
Description
BnaA03g24210D
Coordinates
chrLK031864:-:272620..276486
Molecular Weight (calculated)
26380.5 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.674
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELAVLCD AEVALIVFST RGRLYEYGNN NIRATIERYK KASSDNANTH SVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSALN VKELKQVENR LEKAISRIRS KKHELLLAEI ENLHKREIKL DNESIYLRTK IAEVERFQQH HHQMVSGTEM TAIEALASRN
201: YFAHNIMTIG SGSGAGHGCS YFDPDKKTHL G
101: IQTIQNSNRN LMGDSLSALN VKELKQVENR LEKAISRIRS KKHELLLAEI ENLHKREIKL DNESIYLRTK IAEVERFQQH HHQMVSGTEM TAIEALASRN
201: YFAHNIMTIG SGSGAGHGCS YFDPDKKTHL G
001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.