Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49686 | Canola | nucleus | 98.27 | 98.27 |
| Bra026543.1-P | Field mustard | nucleus | 98.27 | 63.2 |
| CDY51202 | Canola | nucleus | 76.88 | 51.75 |
| CDY02978 | Canola | nucleus | 76.3 | 51.56 |
| CDY04164 | Canola | nucleus | 76.88 | 51.55 |
| AT2G03710.1 | Thale cress | nucleus | 73.99 | 49.61 |
| CDY33113 | Canola | nucleus | 76.88 | 43.04 |
| VIT_01s0011g00110.t01 | Wine grape | nucleus | 45.66 | 32.51 |
| KRH70973 | Soybean | nucleus | 42.2 | 29.92 |
| KRH75123 | Soybean | nucleus | 42.2 | 29.67 |
| CDY26462 | Canola | nucleus | 42.2 | 28.74 |
| Solyc04g005320.2.1 | Tomato | nucleus | 38.15 | 27.73 |
| PGSC0003DMT400072891 | Potato | nucleus | 38.15 | 27.27 |
| CDX69499 | Canola | nucleus | 41.04 | 26.89 |
| Solyc05g012020.2.1 | Tomato | nucleus | 37.57 | 26.86 |
| CDX70651 | Canola | nucleus | 39.88 | 26.64 |
| CDX78653 | Canola | nucleus | 39.88 | 26.64 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 36.42 | 26.25 |
| CDY57524 | Canola | nucleus | 37.57 | 26.0 |
| CDY43239 | Canola | nucleus | 36.42 | 25.2 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 31.79 | 25.11 |
| CDY34718 | Canola | nucleus | 36.42 | 25.0 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 34.68 | 25.0 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 34.1 | 24.79 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 26.01 | 24.06 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 28.9 | 23.15 |
| EER89250 | Sorghum | nucleus | 30.06 | 23.11 |
| Zm00001d045231_P002 | Maize | nucleus | 30.06 | 23.11 |
| OQU93000 | Sorghum | nucleus | 32.37 | 23.05 |
| Os03t0215400-01 | Rice | nucleus | 34.1 | 22.96 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 31.79 | 22.92 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 29.48 | 22.67 |
| CDY27603 | Canola | nucleus | 32.95 | 22.53 |
| CDY15724 | Canola | nucleus | 32.37 | 22.22 |
| CDY66153 | Canola | nucleus | 31.21 | 22.04 |
| CDY01574 | Canola | nucleus | 15.61 | 21.95 |
| CDX84935 | Canola | nucleus | 31.79 | 21.91 |
| CDY11824 | Canola | nucleus | 30.64 | 21.63 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 28.32 | 21.59 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 28.32 | 21.59 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 30.64 | 21.37 |
| Zm00001d028217_P001 | Maize | nucleus | 31.79 | 21.32 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 27.75 | 21.15 |
| CDY03905 | Canola | nucleus | 32.95 | 21.11 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 30.06 | 21.05 |
| Zm00001d048082_P001 | Maize | nucleus | 30.64 | 21.03 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 28.9 | 20.75 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 27.75 | 20.69 |
| CDX85287 | Canola | nucleus | 21.97 | 20.32 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 26.59 | 20.26 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 26.59 | 20.26 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 27.75 | 19.83 |
| CDY18911 | Canola | nucleus | 27.17 | 19.83 |
| CDY35780 | Canola | nucleus | 22.54 | 19.8 |
| Os06t0162800-01 | Rice | nucleus | 25.43 | 19.56 |
| CDY18912 | Canola | nucleus | 27.17 | 19.5 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 25.43 | 19.47 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 27.17 | 19.03 |
| CDY34564 | Canola | nucleus | 23.7 | 18.81 |
| CDY36077 | Canola | nucleus | 23.7 | 18.55 |
| CDX74754 | Canola | nucleus | 27.17 | 18.36 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 28.9 | 18.12 |
| CDY13236 | Canola | mitochondrion | 20.23 | 17.41 |
| CDX95960 | Canola | nucleus | 24.86 | 16.8 |
| CDY33554 | Canola | nucleus | 24.86 | 16.8 |
| CDY53885 | Canola | nucleus | 24.86 | 16.73 |
| CDY65811 | Canola | nucleus | 24.28 | 16.41 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 26.59 | 16.2 |
| CDY16832 | Canola | nucleus | 22.54 | 16.18 |
| CDY00082 | Canola | nucleus | 23.12 | 16.13 |
| CDY42841 | Canola | nucleus | 21.97 | 15.83 |
| CDY02185 | Canola | nucleus | 21.97 | 15.77 |
| CDY47002 | Canola | nucleus | 21.97 | 15.77 |
| CDY58690 | Canola | nucleus | 21.97 | 15.77 |
| CDX86353 | Canola | nucleus | 21.97 | 15.26 |
| CDY45899 | Canola | nucleus | 21.97 | 15.26 |
| CDY04265 | Canola | nucleus | 24.28 | 15.16 |
| CDY65347 | Canola | nucleus | 13.29 | 14.56 |
| CDY07357 | Canola | nucleus | 24.28 | 14.53 |
| CDX90394 | Canola | nucleus | 18.5 | 13.97 |
| CDX98597 | Canola | nucleus | 20.23 | 13.94 |
| CDX78909 | Canola | nucleus | 20.23 | 13.89 |
| CDY09267 | Canola | nucleus | 19.65 | 13.65 |
| CDY25613 | Canola | nucleus | 17.92 | 13.6 |
| CDX89496 | Canola | nucleus | 17.92 | 13.54 |
| CDX89097 | Canola | nucleus | 19.08 | 13.41 |
| CDX75412 | Canola | nucleus | 18.5 | 13.33 |
| CDX69345 | Canola | nucleus | 17.34 | 13.22 |
| CDX75686 | Canola | nucleus | 17.34 | 13.1 |
| CDY48451 | Canola | nucleus | 11.56 | 13.07 |
| CDX90741 | Canola | nucleus | 17.34 | 12.99 |
| CDX69036 | Canola | nucleus | 17.92 | 12.92 |
| CDY65346 | Canola | cytosol | 1.73 | 12.0 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 11.56 | 11.76 |
| CDY71878 | Canola | endoplasmic reticulum | 17.34 | 11.41 |
| CDX99406 | Canola | nucleus | 20.23 | 11.22 |
| CDX79857 | Canola | nucleus | 15.61 | 11.07 |
| CDX72465 | Canola | nucleus | 15.03 | 10.83 |
| CDY49287 | Canola | nucleus | 15.03 | 10.83 |
| CDX98330 | Canola | nucleus | 14.45 | 10.08 |
| CDY49254 | Canola | nucleus | 15.61 | 9.82 |
| CDX89005 | Canola | nucleus | 15.61 | 9.78 |
| CDX71166 | Canola | nucleus | 19.65 | 9.77 |
| CDY60297 | Canola | nucleus | 16.18 | 9.59 |
| CDY00589 | Canola | nucleus | 15.03 | 9.45 |
| CDY42485 | Canola | nucleus | 20.23 | 9.26 |
| CDX67765 | Canola | nucleus | 15.03 | 7.47 |
| CDX71922 | Canola | nucleus | 4.05 | 5.19 |
| CDY19977 | Canola | nucleus | 1.16 | 1.96 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 0.58 | 1.52 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 0.58 | 1.49 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 0.58 | 1.45 |
| CDX79856 | Canola | nucleus | 0.0 | 0.0 |
| CDY72391 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:35.1 | GO:A0A078I8H5 | UniProt:A0A078I8H5 | EnsemblPlants:CDY45709 | ProteinID:CDY45709 | ProteinID:CDY45709.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00082511001 | InterPro:IPR002487 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF352 | InterPro:TF_Kbox | UniParc:UPI0004EE3C28 | SEG:seg | : | : |
Description
BnaC02g35110DBnaC02g35110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8H5]
Coordinates
chrLK032634:+:43192..44153
Molecular Weight (calculated)
19464.8 Da
IEP (calculated)
6.605
GRAVY (calculated)
-0.882
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKSKVESLQ HSQRHLLGEE IAGMGVNELE QLEHQVDASL KQIRSRKAGA MLDQLSDLKA KEEMLLETNR DLRRKLEESD AALTQSMWGA ASGGEHSHQQ
101: QQQYHQQQQQ QQHQQGMSSY QANPPSQENG FFRPLHGNLA LQMSHYNPGV TNASNSATTS QNVINGFFPG WML
101: QQQYHQQQQQ QQHQQGMSSY QANPPSQENG FFRPLHGNLA LQMSHYNPGV TNASNSATTS QNVINGFFPG WML
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSS HYNHNPANAT NSATTSQNVN GFFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.