Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030032.1-P | Field mustard | nucleus | 98.41 | 98.41 |
| CDY03905 | Canola | nucleus | 98.02 | 91.48 |
| AT1G24260.2 | Thale cress | nucleus | 90.48 | 90.84 |
| CDY27603 | Canola | nucleus | 90.08 | 89.72 |
| CDX84935 | Canola | nucleus | 88.49 | 88.84 |
| KRG97386 | Soybean | nucleus | 49.6 | 86.81 |
| CDY66153 | Canola | nucleus | 84.13 | 86.53 |
| CDY11824 | Canola | nucleus | 83.73 | 86.12 |
| VIT_01s0010g03900.t01 | Wine grape | nucleus | 69.44 | 79.19 |
| KRH58800 | Soybean | nucleus | 74.21 | 76.64 |
| KRH42695 | Soybean | nucleus | 73.41 | 75.82 |
| Solyc05g015750.2.1 | Tomato | nucleus | 71.43 | 74.69 |
| PGSC0003DMT400056363 | Potato | nucleus | 71.43 | 74.69 |
| KRH31527 | Soybean | nucleus | 70.63 | 73.25 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 19.44 | 73.13 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 67.86 | 70.37 |
| CDY26462 | Canola | nucleus | 61.9 | 61.42 |
| CDY72391 | Canola | nucleus | 18.25 | 61.33 |
| CDY57524 | Canola | nucleus | 59.92 | 60.4 |
| CDY34718 | Canola | nucleus | 60.32 | 60.32 |
| CDX69499 | Canola | nucleus | 62.3 | 59.47 |
| CDX78653 | Canola | nucleus | 61.11 | 59.46 |
| CDY43239 | Canola | nucleus | 58.73 | 59.2 |
| CDX70651 | Canola | nucleus | 60.71 | 59.07 |
| CDY19977 | Canola | nucleus | 22.22 | 54.9 |
| CDX79856 | Canola | nucleus | 19.05 | 53.93 |
| CDY51202 | Canola | nucleus | 49.6 | 48.64 |
| CDY02978 | Canola | nucleus | 49.21 | 48.44 |
| CDX71922 | Canola | nucleus | 25.79 | 48.15 |
| CDY04164 | Canola | nucleus | 49.21 | 48.06 |
| CDY34564 | Canola | nucleus | 38.49 | 44.5 |
| CDY36077 | Canola | nucleus | 38.89 | 44.34 |
| CDY18911 | Canola | nucleus | 41.27 | 43.88 |
| CDY48451 | Canola | nucleus | 26.19 | 43.14 |
| CDY53885 | Canola | nucleus | 43.25 | 42.41 |
| CDY18912 | Canola | nucleus | 40.48 | 42.32 |
| CDX74754 | Canola | nucleus | 42.86 | 42.19 |
| CDX89097 | Canola | nucleus | 40.08 | 41.06 |
| CDY33113 | Canola | nucleus | 49.21 | 40.13 |
| CDY42841 | Canola | nucleus | 37.7 | 39.58 |
| CDY33554 | Canola | nucleus | 39.68 | 39.06 |
| CDY16832 | Canola | nucleus | 37.3 | 39.0 |
| CDY58690 | Canola | nucleus | 37.3 | 39.0 |
| CDY65811 | Canola | nucleus | 39.29 | 38.67 |
| CDX95960 | Canola | nucleus | 39.29 | 38.67 |
| CDY02185 | Canola | nucleus | 36.9 | 38.59 |
| CDY47002 | Canola | nucleus | 36.9 | 38.59 |
| CDX86353 | Canola | nucleus | 37.7 | 38.15 |
| CDY45899 | Canola | nucleus | 37.7 | 38.15 |
| CDY00082 | Canola | nucleus | 37.3 | 37.9 |
| CDX79857 | Canola | nucleus | 35.71 | 36.89 |
| CDX90741 | Canola | nucleus | 33.33 | 36.36 |
| CDY09267 | Canola | nucleus | 35.71 | 36.14 |
| CDY04265 | Canola | nucleus | 39.68 | 36.1 |
| CDX78909 | Canola | nucleus | 35.32 | 35.32 |
| CDX98597 | Canola | nucleus | 34.92 | 35.06 |
| CDY07357 | Canola | nucleus | 39.68 | 34.6 |
| CDX98330 | Canola | nucleus | 33.73 | 34.27 |
| CDX90394 | Canola | nucleus | 30.56 | 33.62 |
| CDX69345 | Canola | nucleus | 30.16 | 33.48 |
| CDY25613 | Canola | nucleus | 30.16 | 33.33 |
| CDX75686 | Canola | nucleus | 30.16 | 33.19 |
| CDX75412 | Canola | nucleus | 31.35 | 32.92 |
| CDX69036 | Canola | nucleus | 31.35 | 32.92 |
| CDX89496 | Canola | nucleus | 29.76 | 32.75 |
| CDY49686 | Canola | nucleus | 22.22 | 32.37 |
| CDY45709 | Canola | nucleus | 22.22 | 32.37 |
| CDY49254 | Canola | nucleus | 34.92 | 32.0 |
| CDY49287 | Canola | nucleus | 30.16 | 31.67 |
| CDX72465 | Canola | nucleus | 30.16 | 31.67 |
| CDY00589 | Canola | nucleus | 32.94 | 30.18 |
| CDX89005 | Canola | nucleus | 32.94 | 30.07 |
| CDX99406 | Canola | nucleus | 35.32 | 28.53 |
| CDY42485 | Canola | nucleus | 41.27 | 27.51 |
| CDY65347 | Canola | nucleus | 17.06 | 27.22 |
| CDY60297 | Canola | nucleus | 31.35 | 27.05 |
| CDX85287 | Canola | nucleus | 19.84 | 26.74 |
| CDY35780 | Canola | nucleus | 19.84 | 25.38 |
| CDX67765 | Canola | nucleus | 34.13 | 24.71 |
| CDY13236 | Canola | mitochondrion | 19.44 | 24.38 |
| CDY01574 | Canola | nucleus | 11.51 | 23.58 |
| CDX71166 | Canola | nucleus | 30.95 | 22.41 |
| CDY71878 | Canola | endoplasmic reticulum | 21.43 | 20.53 |
| CDY65346 | Canola | cytosol | 0.79 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078FS46 | UniProt:A0A078FS46 | EnsemblPlants:CDY15724 | ProteinID:CDY15724 |
| ProteinID:CDY15724.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00089950001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF351 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF4AF4 | SEG:seg |
Description
BnaA07g08950DBnaA07g08950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FS46]
Coordinates
chrLK032056:-:739441..741431
Molecular Weight (calculated)
29357.0 Da
IEP (calculated)
7.979
GRAVY (calculated)
-0.777
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMIRTLERY QKCNYGPPEP NVPSREALAV EFSSQQEYLK
101: LKERYEALQR TQRNLLGEDL GPLSTKELEL LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLNETNKT LRLRLADGYQ MPLQLNPSQE DYHVDYGRHD
201: QQQHSHHPFF QPLECEPILQ MGYQGHQNHG MESGPSASNY MLGWLPYDTS SI
101: LKERYEALQR TQRNLLGEDL GPLSTKELEL LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLNETNKT LRLRLADGYQ MPLQLNPSQE DYHVDYGRHD
201: QQQHSHHPFF QPLECEPILQ MGYQGHQNHG MESGPSASNY MLGWLPYDTS SI
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAV ELSSQQEYLK
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
101: LKERYDALQR TQRNLLGEDL GPLSTKELES LERQLDSSLK QIRALRTQFM LDQLNDLQSK ERMLTETNKT LRLRLADGYQ MPLQLNPNQE EVDHYGRHHH
201: QQQQHSQAFF QPLECEPILQ IGYQGQQDGM GAGPSVNNYM LGWLPYDTNS I
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.